View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2182_low_4 (Length: 371)
Name: NF2182_low_4
Description: NF2182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2182_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 16 - 354
Target Start/End: Original strand, 46581808 - 46582145
Alignment:
| Q |
16 |
atagtatgacagtgattctattctggtgaagtaaatatgtgagaaattnnnnnnnnnntatcaaagaatacaaaattcttaaaccctttctctttctaaa |
115 |
Q |
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| T |
46581808 |
atagtatgacagtgattctattctagtgaagtaaatatgtgagaaattaaaaaaaaaa-atcaaagaatacaaaattcttaaaccctttctctttctaaa |
46581906 |
T |
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| Q |
116 |
gaaataagcaaagcagatatttctttatatctgctatataatataagtcgtcctttacaaagagaatttcagaatgagaatgtctcataacaacatctca |
215 |
Q |
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| T |
46581907 |
gaaataagcaaagcagatatttctttatatctgctatataatataagtcatcctttacaacgagaatttcagaatgagaatgtctcataacaacatctca |
46582006 |
T |
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| Q |
216 |
ccaagcatccaaataataataacatgcattcttctacactctcctacaatcgtcattacaagtaattaaagtggtgccagtagtaatactgtttaactcc |
315 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
46582007 |
tcaagcatccaaataataataacatgcattcttttacactctcctacaatcttcattacaagtaattaaagtggtgccagtagtaattctgtttaactcc |
46582106 |
T |
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| Q |
316 |
gcatcgcttattctccaactacttccttacattcaatct |
354 |
Q |
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|||| ||||||| |||||||||||||||||||||||||| |
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| T |
46582107 |
gcattgcttattatccaactacttccttacattcaatct |
46582145 |
T |
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