View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2182_low_8 (Length: 254)
Name: NF2182_low_8
Description: NF2182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2182_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 181; Significance: 7e-98; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 26882377 - 26882622
Alignment:
| Q |
1 |
ttgttatatcatctaaaattatgggagaacctatgctacttgctattgcagtgataatcctaggcctctaacgttctcaggctaaccaataaattatcag |
100 |
Q |
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| T |
26882377 |
ttgttatatcatctataattatgggagaacctatgctacttgctattgcagtgataatcctaggcctctaacgttctcaggctaaccaataaattatcac |
26882476 |
T |
|
| Q |
101 |
ccaaacttatacttatgnnnnnnnnnnnnnngtaaattagggttaaagtcattttgccatgcaaaaagtttaagcaaacatgtcaagttgcatctagtgt |
200 |
Q |
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| T |
26882477 |
ccaaacttgtactgatgtgtttttttttt--gtaaattagggttaaagtcattttgccatgcaaaaagtttaagcaaacatgtgaagttgcatctagtgt |
26882574 |
T |
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| Q |
201 |
tggtttgtgttttgatgatgtttatttgctagattctcttgatgatgt |
248 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26882575 |
tggtttgtgttttgatgatgtttatttgctagattctcttgatgatgt |
26882622 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 226
Target Start/End: Original strand, 11533360 - 11533400
Alignment:
| Q |
187 |
gttgcatctagtgtt-ggtttgtgttttgatgatgtttatt |
226 |
Q |
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| T |
11533360 |
gttgcacctagtgttaggtttgtgttttgatgatgtttatt |
11533400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 202 - 248
Target Start/End: Complemental strand, 14119338 - 14119292
Alignment:
| Q |
202 |
ggtttgtgttttgatgatgtttatttgctagattctcttgatgatgt |
248 |
Q |
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| T |
14119338 |
ggtttgtgttttgatgatgtttattagctagattcttttgatgatgt |
14119292 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 185 - 248
Target Start/End: Original strand, 25896639 - 25896703
Alignment:
| Q |
185 |
aagttgcatctagtgtt-ggtttgtgttttgatgatgtttatttgctagattctcttgatgatgt |
248 |
Q |
| |
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||||||| |||||||| ||||||||||||||||||||||| | |||||||||| |||||||||| |
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| T |
25896639 |
aagttgctcctagtgttaggtttgtgttttgatgatgtttactagctagattcttttgatgatgt |
25896703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 204 - 248
Target Start/End: Original strand, 30073412 - 30073456
Alignment:
| Q |
204 |
tttgtgttttgatgatgtttatttgctagattctcttgatgatgt |
248 |
Q |
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| T |
30073412 |
tttgtgttttgatgatgtttattagctagattcatttgatgatgt |
30073456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 248
Target Start/End: Complemental strand, 18562258 - 18562212
Alignment:
| Q |
202 |
ggtttgtgttttgatgatgtttatttgctagattctcttgatgatgt |
248 |
Q |
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||||||||||||||||||||||| | |||||||||| |||| ||||| |
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| T |
18562258 |
ggtttgtgttttgatgatgtttactagctagattcttttgacgatgt |
18562212 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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