View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2183_high_1 (Length: 770)

Name: NF2183_high_1
Description: NF2183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2183_high_1
NF2183_high_1
[»] chr8 (1 HSPs)
chr8 (1-764)||(2064278-2065041)


Alignment Details
Target: chr8 (Bit Score: 748; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 748; E-Value: 0
Query Start/End: Original strand, 1 - 764
Target Start/End: Complemental strand, 2065041 - 2064278
Alignment:
Q  1 ccgttacaaaacataagccctagcattctcatcattataacaatcctcgccgtcaccgtcatcgtttctcttctaatctgcttcctcctccgccacctca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2065041 ccgttacaaaacataagccctagcattctcatcattataacaatcctcgccgtcaccgtcatcgtttctcttctaatctgcttcctcctccgccacctca 2064942  T
Q  101 actgtcaccgtctccgccgtaatccatctccaacaaccaccgaacctcctcctcacactcacagccgtcgtatctctccagaaacaacacctccctccgt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2064941 actgtcaccgtctccgccgtaatccatctccaacaaccaccgaacctcctcctcacactcacagccgtcgtatctctccagaaacaacacctccctccgt 2064842  T
Q  201 catcgactcactccctctcttcacattctcatccatctcccgtcgttcctccgccgtcaccgccgctgattgcgctgtctgtttatcaaagttccgtaac 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  2064841 catcgactcactccctctcttcacattctcatccatctcccgtcgttcctccgccgtcaccgccgctgactgcgctgtctgtttatcaaagttccgtaac 2064742  T
Q  301 tccgacctcctccgttctcttcctctctgttgccacgctttccatgctgaatgcattgacacatggctccgttcaaatctttcatgtccgttatgtcgct 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  2064741 tccgacctcctccgttctcttcctctctgttgccacgctttccatgctgaatgcattgacacatggctccgttcaaatctttcatgtccgttatgtcgcg 2064642  T
Q  401 ccagcattctcccttccgattctgatctcgcgaaaattctccgatcaacttcttcagacagtttccgagttgatatcggaaatataagccgccgtggaaa 500  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2064641 ccagcattctcccttccgattctgatctcgcaaaaattctccgatcaacttcttcagacagtttccgagttgatatcggaaatataagccgccgtggaaa 2064542  T
Q  501 caatcttcccaatcccgacgccgttactaccggtggcgattcaaggtcttattcaattggatcgtttgagtattatgtagttgagccttcggaggtttcg 600  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  2064541 caatcttcccaatcccgacgccgttactaccggtggcgattcaaggtcttattcgattggatcgtttgagtattatgtagttgagccttcggaggtttcg 2064442  T
Q  601 tttacgcaagatcaccggagaagtgtttccgatcagaaagacattcacattccggtatcggaggattcatctatgacacatgaaaatactatcgctggtg 700  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2064441 tttacgcaagatcaccggagaagtgtttccgatcagaaagacattcacattccggtatcggaggattcatctatgacacatgaaaatactatcgctggtg 2064342  T
Q  701 aagttgctggaagtggacattggttgaaggattacgtggacagactatcggcttcgatttcatc 764  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2064341 aagttgctggaagtggacattggttgaaggattacgtggacagactatcggcttcgatttcatc 2064278  T

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