View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2183_high_14 (Length: 308)

Name: NF2183_high_14
Description: NF2183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2183_high_14
NF2183_high_14
[»] chr3 (20 HSPs)
chr3 (11-286)||(10434252-10434527)
chr3 (15-286)||(10088376-10088647)
chr3 (15-286)||(10195259-10195530)
chr3 (15-286)||(10376057-10376328)
chr3 (49-282)||(10076856-10077089)
chr3 (15-282)||(9838451-9838718)
chr3 (15-282)||(9849329-9849596)
chr3 (11-286)||(10580187-10580462)
chr3 (15-286)||(8860872-8861143)
chr3 (15-286)||(10888892-10889163)
chr3 (15-286)||(11160229-11160500)
chr3 (15-286)||(11768820-11769091)
chr3 (48-286)||(10364043-10364281)
chr3 (11-286)||(11149062-11149337)
chr3 (11-286)||(11131234-11131509)
chr3 (15-279)||(13289258-13289522)
chr3 (15-279)||(13332497-13332761)
chr3 (81-279)||(13160573-13160771)
chr3 (15-279)||(13170624-13170888)
chr3 (15-279)||(13343682-13343946)
[»] chr2 (1 HSPs)
chr2 (15-286)||(26906483-26906754)
[»] chr8 (2 HSPs)
chr8 (15-286)||(44957921-44958192)
chr8 (204-280)||(11484609-11484685)
[»] scaffold0083 (1 HSPs)
scaffold0083 (48-286)||(50053-50288)
[»] scaffold0002 (2 HSPs)
scaffold0002 (15-279)||(146151-146415)
scaffold0002 (15-279)||(136100-136364)
[»] chr6 (1 HSPs)
chr6 (15-286)||(31679945-31680222)


Alignment Details
Target: chr3 (Bit Score: 272; Significance: 1e-152; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 11 - 286
Target Start/End: Original strand, 10434252 - 10434527
Alignment:
11 cacagaacttgaaggatttctatgagaaactctcccacttttggtttgcagaccaagtatatctttattctgtgcaaaaagttgcaagctttcacacatg 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
10434252 cacagaacttgaaggatttctatgagaaactctcccacttttggtttgcagaccaagtatatctttattctgtgcaaaaagttgcaagctttcacacatg 10434351  T
111 atcttcatttgagaattgatctctctgtagaaactattaaaaggagatgaaaggaagttcaacacctgattagttttgttttgagcatgtgtattctcca 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
10434352 atcttcatttgagaattgatctctctgtagaaactattaaaaggagatgaaaggaagttcaacacctgattagttttgttttgagcatgtgtattctcca 10434451  T
211 ccttgcatcgaagggaatcataactgatttcgttgagcaagtcctcggcatcaaagacagcatctttcaagtcatc 286  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
10434452 ccttggatcgaagggaatcataactgatttcgttgagcaagtcctcggcatcaaagacagcatctttcaagtcatc 10434527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 15 - 286
Target Start/End: Complemental strand, 10088647 - 10088376
Alignment:
15 gaacttgaaggatttctatgagaaactctcccacttttggtttgcagaccaagtatatctttattctgtgcaaaaagttgcaagctttcacacatgatct 114  Q
    |||||||||||| ||||||| ||||| ||  |  |||| ||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||    
10088647 gaacttgaaggagttctatgtgaaacccttgcgattttagtttgcagaccaagtatatctttattctgtgcaaacaattgcaagctttcacacatgatct 10088548  T
115 tcatttgagaattgatctctctgtagaaactattaaaaggagatgaaaggaagttcaacacctgattagttttgttttgagcatgtgtattctccacctt 214  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| | ||||||||||||| |||| ||||||||||||    
10088547 tcatttgagaattgatctctctgtagaagctattaaaaggagatgaaaggaagttcatcacctgataacttttgttttgagcttgtgcattctccacctt 10088448  T
215 gcatcgaagggaatcataactgatttcgttgagcaagtcctcggcatcaaagacagcatctttcaagtcatc 286  Q
    |||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||    
10088447 gcatcgaagggaatcataactgatttcgctgagcaagtcctcagcatcaaagacagcatctttcaagtcatc 10088376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 15 - 286
Target Start/End: Complemental strand, 10195530 - 10195259
Alignment:
15 gaacttgaaggatttctatgagaaactctcccacttttggtttgcagaccaagtatatctttattctgtgcaaaaagttgcaagctttcacacatgatct 114  Q
    |||||||||||| ||||||| ||||| ||  |  |||| ||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||    
10195530 gaacttgaaggagttctatgtgaaacccttgcgtttttagtttgcagaccaagtatatctttattctgtgcaaacaattgcaagctttcacacatgatct 10195431  T
115 tcatttgagaattgatctctctgtagaaactattaaaaggagatgaaaggaagttcaacacctgattagttttgttttgagcatgtgtattctccacctt 214  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| | ||||||||||||| |||| ||||||||||||    
10195430 tcatttgagaattgatctctctgtagaagctattaaaaggagatgaaaggaagttcatcacctgataacttttgttttgagcttgtgcattctccacctt 10195331  T
215 gcatcgaagggaatcataactgatttcgttgagcaagtcctcggcatcaaagacagcatctttcaagtcatc 286  Q
    |||||||||||||||||||||||||||| ||| ||||||||| |||||||||||||||||||||||||||||    
10195330 gcatcgaagggaatcataactgatttcgctgaacaagtcctcagcatcaaagacagcatctttcaagtcatc 10195259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 15 - 286
Target Start/End: Original strand, 10376057 - 10376328
Alignment:
15 gaacttgaaggatttctatgagaaactctcccacttttggtttgcagaccaagtatatctttattctgtgcaaaaagttgcaagctttcacacatgatct 114  Q
    |||||||||||  ||||| |||||||||| |||||||| ||||||||||||||||||||||||| ||||||||| | ||||| ||| |||||||||| ||    
10376057 gaacttgaaggtgttctacgagaaactctaccacttttagtttgcagaccaagtatatctttatactgtgcaaagaattgcaggctatcacacatgacct 10376156  T
115 tcatttgagaattgatctctctgtagaaactattaaaaggagatgaaaggaagttcaacacctgattagttttgttttgagcatgtgtattctccacctt 214  Q
    ||||||||||||||||||||||||||||  | ||||||||||| |||||||||||||||||||||||||||||||||||||| | || ||||||||||||    
10376157 tcatttgagaattgatctctctgtagaaggtgttaaaaggagaagaaaggaagttcaacacctgattagttttgttttgagcttttgcattctccacctt 10376256  T
215 gcatcgaagggaatcataactgatttcgttgagcaagtcctcggcatcaaagacagcatctttcaagtcatc 286  Q
    |||||| |||||||||||||||||||| |||||||||||||| |||||||||| ||||||||||||||||||    
10376257 gcatcgcagggaatcataactgatttcattgagcaagtcctcagcatcaaagatagcatctttcaagtcatc 10376328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 49 - 282
Target Start/End: Complemental strand, 10077089 - 10076856
Alignment:
49 ttttggtttgcagaccaagtatatctttattctgtgcaaaaagttgcaagctttcacacatgatcttcatttgagaattgatctctctgtagaaactatt 148  Q
    |||| |||||||||||||||| |||||||||||||||||| | |||||| |||||||||||||||||| ||||||||||||||||| ||||||| |||||    
10077089 ttttagtttgcagaccaagtacatctttattctgtgcaaacaattgcaacctttcacacatgatcttcgtttgagaattgatctctttgtagaagctatt 10076990  T
149 aaaaggagatgaaaggaagttcaacacctgattagttttgttttgagcatgtgtattctccaccttgcatcgaagggaatcataactgatttcgttgagc 248  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| || ||||| ||||||||||||||||||    
10076989 aaaaggagatgaaaggaagttcaacacctgattagttttgttttgagcttgtgcattctccaccttgcatcgcagtgaatcgtaactgatttcgttgagc 10076890  T
249 aagtcctcggcatcaaagacagcatctttcaagt 282  Q
    ||||||||||||||||||||||||||||||||||    
10076889 aagtcctcggcatcaaagacagcatctttcaagt 10076856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 15 - 282
Target Start/End: Complemental strand, 9838718 - 9838451
Alignment:
15 gaacttgaaggatttctatgagaaactctcccacttttggtttgcagaccaagtatatctttattctgtgcaaaaagttgcaagctttcacacatgatct 114  Q
    ||||| |||||  ||||| ||||||||||  ||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||| |||||||||||||    
9838718 gaactagaaggtgttctacgagaaactctagcacttttagtttgcaaaccaagtatatctttattctgtgcataaagttgcaagctatcacacatgatct 9838619  T
115 tcatttgagaattgatctctctgtagaaactattaaaaggagatgaaaggaagttcaacacctgattagttttgttttgagcatgtgtattctccacctt 214  Q
    |||| || |||||||||||| |||| ||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| | || ||||||||||||    
9838618 tcatctgggaattgatctctttgtaaaaactattaaaaggagaagaaaggaagttccacacctgattagttttgttttgagcttttgcattctccacctt 9838519  T
215 gcatcgaagggaatcataactgatttcgttgagcaagtcctcggcatcaaagacagcatctttcaagt 282  Q
    |||||| |||||||| |||||||||||||||||||| ||||| |||||||||||| ||||||||||||    
9838518 gcatcgcagggaatcgtaactgatttcgttgagcaaatcctcagcatcaaagacaacatctttcaagt 9838451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 15 - 282
Target Start/End: Complemental strand, 9849596 - 9849329
Alignment:
15 gaacttgaaggatttctatgagaaactctcccacttttggtttgcagaccaagtatatctttattctgtgcaaaaagttgcaagctttcacacatgatct 114  Q
    ||||| |||||  ||||| ||||||||||  ||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||| |||||||||||||    
9849596 gaactagaaggtgttctacgagaaactctagcacttttagtttgcaaaccaagtatatctttattctgtgcataaagttgcaagctatcacacatgatct 9849497  T
115 tcatttgagaattgatctctctgtagaaactattaaaaggagatgaaaggaagttcaacacctgattagttttgttttgagcatgtgtattctccacctt 214  Q
    |||| || |||||||||||| |||| ||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| | || ||||||||||||    
9849496 tcatctgggaattgatctctttgtaaaaactattaaaaggagaagaaaggaagttccacacctgattagttttgttttgagcttttgcattctccacctt 9849397  T
215 gcatcgaagggaatcataactgatttcgttgagcaagtcctcggcatcaaagacagcatctttcaagt 282  Q
    |||||| |||||||| |||||||||||||||||||| ||||| |||||||||||| ||||||||||||    
9849396 gcatcgcagggaatcgtaactgatttcgttgagcaaatcctcagcatcaaagacaacatctttcaagt 9849329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 11 - 286
Target Start/End: Complemental strand, 10580462 - 10580187
Alignment:
11 cacagaacttgaaggatttctatgagaaactctcccacttttggtttgcagaccaagtatatctttattctgtgcaaaaagttgcaagctttcacacatg 110  Q
    |||||||||||||||| ||| ||||||||||||  |||| || ||||||| |||||| | ||||||||  | |||||| | ||||| | |||||||||||    
10580462 cacagaacttgaaggagttccatgagaaactctagcactcttagtttgcaaaccaaggacatctttatgatttgcaaacaattgcaggttttcacacatg 10580363  T
111 atcttcatttgagaattgatctctctgtagaaactattaaaaggagatgaaaggaagttcaacacctgattagttttgttttgagcatgtgtattctcca 210  Q
    |||||||| || |||||||||||||| ||||| |||||||||||||| |||||||||||| ||||||||||||||||||||||||| |||||||||||||    
10580362 atcttcatctgggaattgatctctctatagaagctattaaaaggagaagaaaggaagttccacacctgattagttttgttttgagcttgtgtattctcca 10580263  T
211 ccttgcatcgaagggaatcataactgatttcgttgagcaagtcctcggcatcaaagacagcatctttcaagtcatc 286  Q
    |||||||||| |||||||| ||||||||||| |||||||||||||| ||||||| || ||||||||||||||||||    
10580262 ccttgcatcgcagggaatcgtaactgatttcattgagcaagtcctcagcatcaatgatagcatctttcaagtcatc 10580187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 15 - 286
Target Start/End: Complemental strand, 8861143 - 8860872
Alignment:
15 gaacttgaaggatttctatgagaaactctcccacttttggtttgcagaccaagtatatctttattctgtgcaaaaagttgcaagctttcacacatgatct 114  Q
    |||||||||||  ||||| |||||||| | ||| |||| ||||||| |||||| ||||||||||  ||||| |||| ||||||||| |||||||||||||    
8861143 gaacttgaaggggttctacgagaaactttaccaattttagtttgcaaaccaaggatatctttatgttgtgcgaaaatttgcaagctatcacacatgatct 8861044  T
115 tcatttgagaattgatctctctgtagaaactattaaaaggagatgaaaggaagttcaacacctgattagttttgttttgagcatgtgtattctccacctt 214  Q
    ||||||| ||||||||||||||||||||  | ||||||||||| |||||||||||| ||||||||||||||||||||  ||| ||||||| |||||||||    
8861043 tcatttgggaattgatctctctgtagaaggtgttaaaaggagaagaaaggaagttccacacctgattagttttgtttgcagcttgtgtatcctccacctt 8860944  T
215 gcatcgaagggaatcataactgatttcgttgagcaagtcctcggcatcaaagacagcatctttcaagtcatc 286  Q
    |||||| |  |||||||||||||||| ||||||||| ||||| |||||||||| ||||||||||||||||||    
8860943 gcatcgtaatgaatcataactgatttggttgagcaaatcctcagcatcaaagagagcatctttcaagtcatc 8860872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 15 - 286
Target Start/End: Complemental strand, 10889163 - 10888892
Alignment:
15 gaacttgaaggatttctatgagaaactctcccacttttggtttgcagaccaagtatatctttattctgtgcaaaaagttgcaagctttcacacatgatct 114  Q
    |||||||||||  ||||| |||||||| | ||| |||| ||||||| |||||| ||||||||||  |||||||||||||||||||| | |||||||||||    
10889163 gaacttgaaggggttctacgagaaactttaccaattttagtttgcaaaccaaggatatctttatgttgtgcaaaaagttgcaagctattacacatgatct 10889064  T
115 tcatttgagaattgatctctctgtagaaactattaaaaggagatgaaaggaagttcaacacctgattagttttgttttgagcatgtgtattctccacctt 214  Q
    ||||||| ||||||||||||||||||||  | ||||||||||| ||||||||| || |||||||| |||||||||||   |  |||||||||||||||||    
10889063 tcatttgggaattgatctctctgtagaaggtgttaaaaggagaagaaaggaagctccacacctgactagttttgtttgtggattgtgtattctccacctt 10888964  T
215 gcatcgaagggaatcataactgatttcgttgagcaagtcctcggcatcaaagacagcatctttcaagtcatc 286  Q
    |||||| |  || |||||||| |||| ||| ||||| ||||| |||||||||||||||||||||||||||||    
10888963 gcatcgcaatgattcataactaatttggttcagcaaatcctccgcatcaaagacagcatctttcaagtcatc 10888892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 15 - 286
Target Start/End: Original strand, 11160229 - 11160500
Alignment:
15 gaacttgaaggatttctatgagaaactctcccacttttggtttgcagaccaagtatatctttattctgtgcaaaaagttgcaagctttcacacatgatct 114  Q
    |||||||||||  ||||| |||||||| | ||| ||||  |||||| |||||| ||||||||||  ||||| |||||||||||||| |||||||||||||    
11160229 gaacttgaaggggttctacgagaaactttaccaattttactttgcaaaccaaggatatctttatgttgtgcgaaaagttgcaagctatcacacatgatct 11160328  T
115 tcatttgagaattgatctctctgtagaaactattaaaaggagatgaaaggaagttcaacacctgattagttttgttttgagcatgtgtattctccacctt 214  Q
    ||||||| |||||||||||||| |||||  | ||||||||||| ||||||||| || |||||||| |||||||||||   |  |||||||||||||||||    
11160329 tcatttgggaattgatctctctatagaaggtgttaaaaggagaagaaaggaagctccacacctgactagttttgtttgtggattgtgtattctccacctt 11160428  T
215 gcatcgaagggaatcataactgatttcgttgagcaagtcctcggcatcaaagacagcatctttcaagtcatc 286  Q
    |||||| || || |||||||| ||||  || ||||| |||||||||||||||||||||||||||||||||||    
11160429 gcatcgcagtgattcataactaatttgattcagcaaatcctcggcatcaaagacagcatctttcaagtcatc 11160500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 15 - 286
Target Start/End: Complemental strand, 11769091 - 11768820
Alignment:
15 gaacttgaaggatttctatgagaaactctcccacttttggtttgcagaccaagtatatctttattctgtgcaaaaagttgcaagctttcacacatgatct 114  Q
    |||||||||||  ||||| ||||||||||  ||||||| ||||||| ||| | |||||||||||| |||||||||||||||| |||||||||||||||||    
11769091 gaacttgaaggtgttctacgagaaactctagcacttttagtttgcaaacctaatatatctttattttgtgcaaaaagttgcaggctttcacacatgatct 11768992  T
115 tcatttgagaattgatctctctgtagaaactattaaaaggagatgaaaggaagttcaacacctgattagttttgttttgagcatgtgtattctccacctt 214  Q
    |||| || |||||||||||||  ||||   | |||||||| |||||||| |||||| ||||||||||||||||||||  ||| ||| | ||||||| |||    
11768991 tcatatgggaattgatctctccatagatgtttttaaaaggggatgaaagtaagttccacacctgattagttttgtttctagcttgtttcttctccatctt 11768892  T
215 gcatcgaagggaatcataactgatttcgttgagcaagtcctcggcatcaaagacagcatctttcaagtcatc 286  Q
    |||||| ||||| |||||||| ||||  | ||| || ||||| |||||||||| ||| ||||||||||||||    
11768891 gcatcggagggagtcataacttatttgatcgagtaaatcctcagcatcaaagatagcgtctttcaagtcatc 11768820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 48 - 286
Target Start/End: Original strand, 10364043 - 10364281
Alignment:
48 cttttggtttgcagaccaagtatatctttattctgtgcaaaaagttgcaagctttcacacatgatcttcatttgagaattgatctctctgtagaaactat 147  Q
    ||||| ||||||| || ||||||||||||  ||| | ||||| |||||| ||||||||||||||||||||| || |||||||||||||| ||||| ||||    
10364043 cttttagtttgcaaacgaagtatatcttttctcttttcaaaatgttgcaggctttcacacatgatcttcatctgggaattgatctctctatagaagctat 10364142  T
148 taaaaggagatgaaaggaagttcaacacctgattagttttgttttgagcatgtgtattctccaccttgcatcgaagggaatcataactgatttcgttgag 247  Q
    | ||||||||| ||||||||||| ||||||||||| || |||||  ||| ||| || ||||||   ||||||| ||||||||||||||||||||||  ||    
10364143 tgaaaggagataaaaggaagttccacacctgattacttctgtttccagcttgtttactctccattgtgcatcgcagggaatcataactgatttcgtgaag 10364242  T
248 caagtcctcggcatcaaagacagcatctttcaagtcatc 286  Q
    ||| |||||||||||||||||||||||||||||| ||||    
10364243 caaatcctcggcatcaaagacagcatctttcaagccatc 10364281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 11 - 286
Target Start/End: Original strand, 11149062 - 11149337
Alignment:
11 cacagaacttgaaggatttctatgagaaactctcccacttttggtttgcagaccaagtatatctttattctgtgcaaaaagttgcaagctttcacacatg 110  Q
    ||||||||| |||||  |||||||  ||| |||  ||||||| ||||||| |||||| |||||||| || |||||||||| ||||| | | |||||||||    
11149062 cacagaactagaaggtgttctatggaaaattctagcacttttagtttgcaaaccaaggatatctttgttttgtgcaaaaatttgcaggttgtcacacatg 11149161  T
111 atcttcatttgagaattgatctctctgtagaaactattaaaaggagatgaaaggaagttcaacacctgattagttttgttttgagcatgtgtattctcca 210  Q
     |||||||||| |||||||||||||||||||   | ||||||||||| ||||||||| || |||||||| |||||||||||   |  |||||||||||||    
11149162 gtcttcatttgggaattgatctctctgtagatggtgttaaaaggagaagaaaggaagctccacacctgactagttttgtttgtggattgtgtattctcca 11149261  T
211 ccttgcatcgaagggaatcataactgatttcgttgagcaagtcctcggcatcaaagacagcatctttcaagtcatc 286  Q
    |||||||||| || || |||||||| ||||  || ||||| |||||||||||||||| ||||||||||||||||||    
11149262 ccttgcatcgcagtgattcataactaatttgattcagcaaatcctcggcatcaaagatagcatctttcaagtcatc 11149337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 11 - 286
Target Start/End: Original strand, 11131234 - 11131509
Alignment:
11 cacagaacttgaaggatttctatgagaaactctcccacttttggtttgcagaccaagtatatctttattctgtgcaaaaagttgcaagctttcacacatg 110  Q
    ||||||||| |||||  |||||||  ||| |||  ||||||| ||||| | |||||| |||||||| || |||||||||| ||||| | | |||||||||    
11131234 cacagaactagaaggtgttctatggaaaattctagcacttttagtttgtaaaccaaggatatctttgttttgtgcaaaaatttgcaggttgtcacacatg 11131333  T
111 atcttcatttgagaattgatctctctgtagaaactattaaaaggagatgaaaggaagttcaacacctgattagttttgttttgagcatgtgtattctcca 210  Q
     |||| ||||| |||||||||||||  ||||   | ||||||||||| |||||||||||| | ||||||||||||||||||  ||| |||||||||||||    
11131334 gtcttaatttgggaattgatctctccatagatgtttttaaaaggagaagaaaggaagttccagacctgattagttttgtttgcagcttgtgtattctcca 11131433  T
211 ccttgcatcgaagggaatcataactgatttcgttgagcaagtcctcggcatcaaagacagcatctttcaagtcatc 286  Q
    |||||||||| || || |||||||| ||||  || ||||| ||||| |||||||||| ||||||||||||||||||    
11131434 ccttgcatcgcagtgactcataactaatttgattcagcaaatcctccgcatcaaagatagcatctttcaagtcatc 11131509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 15 - 279
Target Start/End: Complemental strand, 13289522 - 13289258
Alignment:
15 gaacttgaaggatttctatgagaaactctcccacttttggtttgcagaccaagtatatctttattctgtgcaaaaagttgcaagctttcacacatgatct 114  Q
    |||||||||||  ||||| ||||||||||||| ||    |||||||  ||||| |||||| | |  ||||||||||| ||||  |||| |||||| ||||    
13289522 gaacttgaaggcgttctaagagaaactctccctctcacagtttgcaagccaaggatatctctctgttgtgcaaaaagctgcagcctttgacacataatct 13289423  T
115 tcatttgagaattgatctctctgtagaaactattaaaaggagatgaaaggaagttcaacacctgattagttttgttttgagcatgtgtattctccacctt 214  Q
    ||||||| |||||||||||||  |||| | | |||||||||||||||| || |||| | |||||||||||  |||||| ||| ||| | |||||||||||    
13289422 tcatttgtgaattgatctctccatagagagttttaaaaggagatgaaaagaggttccaaacctgattagtcatgttttcagcttgtttcttctccacctt 13289323  T
215 gcatcgaagggaatcataactgatttcgttgagcaagtcctcggcatcaaagacagcatctttca 279  Q
     ||||| ||||| || ||| |||||| ||| ||||| ||||| |||||| |||  ||||||||||    
13289322 acatcgcagggagtcgtaattgatttggttaagcaaatcctcagcatcatagattgcatctttca 13289258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 15 - 279
Target Start/End: Complemental strand, 13332761 - 13332497
Alignment:
15 gaacttgaaggatttctatgagaaactctcccacttttggtttgcagaccaagtatatctttattctgtgcaaaaagttgcaagctttcacacatgatct 114  Q
    |||||||||||  ||||| ||||||||||| | ||    |||||||  ||||| |||||| | |  ||||||||||||||||  |||| |||||| ||||    
13332761 gaacttgaaggcgttctaagagaaactctcgcgctcacagtttgcaagccaagaatatctctctgttgtgcaaaaagttgcagcctttgacacataatct 13332662  T
115 tcatttgagaattgatctctctgtagaaactattaaaaggagatgaaaggaagttcaacacctgattagttttgttttgagcatgtgtattctccacctt 214  Q
    ||||||| |||||||||||||  |||| | | ||||||||||| |||| || |||| | |||||||||||  |||||| ||| ||| | |||||||||||    
13332661 tcatttgtgaattgatctctccatagagatttttaaaaggagacgaaaagaggttccaaacctgattagtcatgttttcagcttgtttcttctccacctt 13332562  T
215 gcatcgaagggaatcataactgatttcgttgagcaagtcctcggcatcaaagacagcatctttca 279  Q
     ||||| ||||| || ||| |||||| ||| ||||| ||||| |||||| |||  ||||||||||    
13332561 acatcgcagggagtcgtaattgatttggttaagcaaatcctcagcatcatagattgcatctttca 13332497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 81 - 279
Target Start/End: Complemental strand, 13160771 - 13160573
Alignment:
81 tgtgcaaaaagttgcaagctttcacacatgatcttcatttgagaattgatctctctgtagaaactattaaaaggagatgaaaggaagttcaacacctgat 180  Q
    ||||||||||||||||  |||| |||||| ||||||||||| |||||||||||||  |||| | | |||||||||||||||| || |||| | |||||||    
13160771 tgtgcaaaaagttgcagcctttgacacataatcttcatttgtgaattgatctctccatagagatttttaaaaggagatgaaaagaggttccaaacctgat 13160672  T
181 tagttttgttttgagcatgtgtattctccaccttgcatcgaagggaatcataactgatttcgttgagcaagtcctcggcatcaaagacagcatctttca 279  Q
    ||||  |||||| ||| ||| | ||||||||| | ||||| ||||| || ||| |||||| ||| ||||| ||||| |||||| |||  ||||||||||    
13160671 tagtcatgttttcagcttgtttcttctccaccgtacatcgcagggagtcgtaattgatttggttaagcaaatcctcagcatcatagattgcatctttca 13160573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 15 - 279
Target Start/End: Complemental strand, 13170888 - 13170624
Alignment:
15 gaacttgaaggatttctatgagaaactctcccacttttggtttgcagaccaagtatatctttattctgtgcaaaaagttgcaagctttcacacatgatct 114  Q
    |||||||||||  ||||  ||||||||||||| ||    |||||||  ||||| |||||| | |  ||||||||||||||||  |||| |||||| ||||    
13170888 gaacttgaaggcgttcttagagaaactctcccgctcacagtttgcaagccaaggatatctctctgttgtgcaaaaagttgcagcctttgacacataatct 13170789  T
115 tcatttgagaattgatctctctgtagaaactattaaaaggagatgaaaggaagttcaacacctgattagttttgttttgagcatgtgtattctccacctt 214  Q
    ||||||| |||||||||||||  |||| | | ||||||||| |||||| || |||| | |||||||||||  |||||| ||  ||| | |||||||||||    
13170788 tcatttgtgaattgatctctccatagagatttttaaaaggacatgaaaagaggttccaaacctgattagtcatgttttcagattgtatcttctccacctt 13170689  T
215 gcatcgaagggaatcataactgatttcgttgagcaagtcctcggcatcaaagacagcatctttca 279  Q
     ||||| ||||| || ||| |||||| ||| ||||| ||||| |||||| |||  ||||||||||    
13170688 acatcggagggagtcgtaattgatttggttaagcaaatcctcagcatcatagattgcatctttca 13170624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 15 - 279
Target Start/End: Complemental strand, 13343946 - 13343682
Alignment:
15 gaacttgaaggatttctatgagaaactctcccacttttggtttgcagaccaagtatatctttattctgtgcaaaaagttgcaagctttcacacatgatct 114  Q
    |||||||||||  ||||  ||||||||||||| ||    |||||||  ||||| |||||| | |  ||||||||||  ||||  |||| |||||| ||||    
13343946 gaacttgaaggtgttcttagagaaactctcccgctcacagtttgcaagccaaggatatctctctgttgtgcaaaaatctgcagcctttgacacataatct 13343847  T
115 tcatttgagaattgatctctctgtagaaactattaaaaggagatgaaaggaagttcaacacctgattagttttgttttgagcatgtgtattctccacctt 214  Q
    ||||||| |||||||||||||  |||| | | ||||| ||||| |||| || |||| | |||||||||||  |||||| ||| ||| | ||||||||| |    
13343846 tcatttgtgaattgatctctccatagagatttttaaacggagacgaaaagaggttccaaacctgattagtcatgttttcagcttgtttcttctccaccgt 13343747  T
215 gcatcgaagggaatcataactgatttcgttgagcaagtcctcggcatcaaagacagcatctttca 279  Q
     ||||| ||||| || ||  |||||| ||| ||||| ||||| |||||| |||  ||||||||||    
13343746 acatcgcagggagtcgtagttgatttggttaagcaaatcctcagcatcatagattgcatctttca 13343682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 15 - 286
Target Start/End: Complemental strand, 26906754 - 26906483
Alignment:
15 gaacttgaaggatttctatgagaaactctcccacttttggtttgcagaccaagtatatctttattctgtgcaaaaagttgcaagctttcacacatgatct 114  Q
    |||||||||||  ||||| ||||||||||  ||||||| ||||||| |||||| ||||||||||  |||||||| | ||||| |||||||||||| ||||    
26906754 gaacttgaaggtgttctacgagaaactctagcacttttagtttgcaaaccaaggatatctttatgttgtgcaaacaattgcaggctttcacacattatct 26906655  T
115 tcatttgagaattgatctctctgtagaaactattaaaaggagatgaaaggaagttcaacacctgattagttttgttttgagcatgtgtattctccacctt 214  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||    
26906654 tcatttgagaattgatctctctgtagaagctattaaaaggagatgaaaggaagttcaacacctgattagttttgttttgagcttgtgtattctcgacttt 26906555  T
215 gcatcgaagggaatcataactgatttcgttgagcaagtcctcggcatcaaagacagcatctttcaagtcatc 286  Q
    |||||| |||||||||||||| ||||||||||||||||||||  ||||||||| ||||||||||||||||||    
26906554 gcatcgcagggaatcataactaatttcgttgagcaagtcctcaacatcaaagatagcatctttcaagtcatc 26906483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 124; Significance: 9e-64; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 15 - 286
Target Start/End: Original strand, 44957921 - 44958192
Alignment:
15 gaacttgaaggatttctatgagaaactctcccacttttggtttgcagaccaagtatatctttattctgtgcaaaaagttgcaagctttcacacatgatct 114  Q
    |||||||||||  ||||||||||||||||  ||||||| |||| || ||||| ||||||||||| ||||||||||||||||| |  ||||||||| ||||    
44957921 gaacttgaaggtgttctatgagaaactctagcacttttagtttccaaaccaattatatctttatgctgtgcaaaaagttgcagggattcacacataatct 44958020  T
115 tcatttgagaattgatctctctgtagaaactattaaaaggagatgaaaggaagttcaacacctgattagttttgttttgagcatgtgtattctccacctt 214  Q
    |||||||||||||||||||||  |||||  | |||||||||||||||||||||||| | |||||||||||||||||   | | |||||||||||||| ||    
44958021 tcatttgagaattgatctctccatagaagtttttaaaaggagatgaaaggaagttccagacctgattagttttgttggcaacttgtgtattctccacttt 44958120  T
215 gcatcgaagggaatcataactgatttcgttgagcaagtcctcggcatcaaagacagcatctttcaagtcatc 286  Q
    ||| || ||||||||||| || |||| ||||||||| |||||||||||||| |  | || ||||||||||||    
44958121 gcaacgcagggaatcatagctaatttggttgagcaaatcctcggcatcaaatattgtatttttcaagtcatc 44958192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 280
Target Start/End: Complemental strand, 11484685 - 11484609
Alignment:
204 ttctccaccttgcatcgaagggaatcataactgatttcgttgagcaagtcctcggcatcaaagacagcatctttcaa 280  Q
    ||||| ||||||||||| | || |||||| |||||||| || ||||| ||||| ||||||||||  |||||||||||    
11484685 ttctctaccttgcatcgcaaggcatcatagctgatttcattaagcaaatcctcagcatcaaagattgcatctttcaa 11484609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 48 - 286
Target Start/End: Original strand, 50053 - 50288
Alignment:
48 cttttggtttgcagaccaagtatatctttattctgtgcaaaaagttgcaagctttcacacatgatcttcatttgagaattgatctctctgtagaaactat 147  Q
    ||||| ||||||| || ||||||||||||  | | | |||||||||||| ||||||||||||||||||||| || |||||||||||||  |||    | |    
50053 cttttagtttgcaaacgaagtatatcttttcttttttcaaaaagttgcaggctttcacacatgatcttcatctgggaattgatctctccatagt---ttt 50149  T
148 taaaaggagatgaaaggaagttcaacacctgattagttttgttttgagcatgtgtattctccaccttgcatcgaagggaatcataactgatttcgttgag 247  Q
    |||||| |||||||| |||||||| |||||||| | ||||| ||||||| | || |||||||||||||||||| ||||||||||||||||||||| ||||    
50150 taaaagaagatgaaaagaagttcatcacctgataaattttgctttgagcttttgcattctccaccttgcatcgcagggaatcataactgatttcgctgag 50249  T
248 caagtcctcggcatcaaagacagcatctttcaagtcatc 286  Q
    ||||||||| |||||||||||||||||||||||||||||    
50250 caagtcctcagcatcaaagacagcatctttcaagtcatc 50288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 69; Significance: 6e-31; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 15 - 279
Target Start/End: Original strand, 146151 - 146415
Alignment:
15 gaacttgaaggatttctatgagaaactctcccacttttggtttgcagaccaagtatatctttattctgtgcaaaaagttgcaagctttcacacatgatct 114  Q
    |||||||||||  ||||  ||||||||||||| ||    |||||||  ||||| |||||| | |  ||||||||||||||||  |||| |||||| ||||    
146151 gaacttgaaggcgttcttagagaaactctcccgctcacagtttgcaagccaaggatatctctctgttgtgcaaaaagttgcagcctttgacacataatct 146250  T
115 tcatttgagaattgatctctctgtagaaactattaaaaggagatgaaaggaagttcaacacctgattagttttgttttgagcatgtgtattctccacctt 214  Q
    ||||||| |||||||||||||  |||| | | |||||||||||||||| || |||| | |||||||||||  |||||| ||| ||| | ||||||||| |    
146251 tcatttgtgaattgatctctccatagagatttttaaaaggagatgaaaagaggttccaaacctgattagtcatgttttcagcttgtttcttctccaccgt 146350  T
215 gcatcgaagggaatcataactgatttcgttgagcaagtcctcggcatcaaagacagcatctttca 279  Q
     ||||| ||||| || ||| |||||| ||| ||||| ||||| |||||| |||  ||||||||||    
146351 acatcgcagggagtcgtaattgatttggttaagcaaatcctcagcatcatagattgcatctttca 146415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 15 - 279
Target Start/End: Original strand, 136100 - 136364
Alignment:
15 gaacttgaaggatttctatgagaaactctcccacttttggtttgcagaccaagtatatctttattctgtgcaaaaagttgcaagctttcacacatgatct 114  Q
    |||||||||||  ||||  ||||||||||||| ||    |||||||  ||||| |||||| | |  ||||||||||||||||  |||| |||||| ||||    
136100 gaacttgaaggcgttcttagagaaactctcccgctcacagtttgcaagccaaggatatctctctgttgtgcaaaaagttgcagcctttgacacataatct 136199  T
115 tcatttgagaattgatctctctgtagaaactattaaaaggagatgaaaggaagttcaacacctgattagttttgttttgagcatgtgtattctccacctt 214  Q
    ||||||| |||||||||||||  |||| | | ||||||||| |||||| || |||| | |||||||||||  |||||| ||  ||| | |||||||||||    
136200 tcatttgtgaattgatctctccatagagatttttaaaaggacatgaaaagaggttccaaacctgattagtcatgttttcagattgtatcttctccacctt 136299  T
215 gcatcgaagggaatcataactgatttcgttgagcaagtcctcggcatcaaagacagcatctttca 279  Q
     ||||| ||||| || ||| |||||| ||| ||||| ||||| |||||| |||  ||||||||||    
136300 acatcggagggagtcgtaattgatttggttaagcaaatcctcagcatcatagattgcatctttca 136364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 15 - 286
Target Start/End: Original strand, 31679945 - 31680222
Alignment:
15 gaacttgaaggatttctatgagaaactctcccacttttggtttgcagaccaagtatatctttattctgtgcaaaaagttgcaagctttcacacatgatct 114  Q
    |||||||||||  ||||| || |||| || ||||||   |||||||  ||||| |||||||| |  |||||||||||||| |  ||||||  |||  |||    
31679945 gaacttgaaggtgttctaagaaaaaccctaccacttacagtttgcaacccaaggatatctttttgttgtgcaaaaagttggagcctttcaatcatactct 31680044  T
115 tcatttgagaattgatctctctgtagaaactattaaaaggagatgaaaggaagttcaacacctgattagttttgttttgagcatgtgtatt------ctc 208  Q
    ||||||| |||||||||||||  || ||  | | |||||||||||||||||| ||| | ||||||  |||  |||||| ||| ||||||||      |||    
31680045 tcatttgggaattgatctctccatacaagttttgaaaaggagatgaaaggaaattccaaacctgaccagtgatgttttcagcttgtgtattactattctc 31680144  T
209 caccttgcatcgaagggaatcataactgatttcgttgagcaagtcctcggcatcaaagacagcatctttcaagtcatc 286  Q
    |||||||| || |||| ||||||||||||| | ||||||||| ||||| |||||| | |  ||||||||||| |||||    
31680145 caccttgcttctaaggcaatcataactgatctggttgagcaaatcctcagcatcatatattgcatctttcaactcatc 31680222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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