View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2183_high_24 (Length: 237)
Name: NF2183_high_24
Description: NF2183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2183_high_24 |
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Alignment Details
Target: chr1 (Bit Score: 174; Significance: 9e-94; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 37558837 - 37559072
Alignment:
| Q |
1 |
attagtaatggtccaagccttttgcactagtgactagtgaagtatgtatacaaactatatgtagcaatgttccaagcctcttgcagcggtgactagtgaa |
100 |
Q |
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| T |
37558837 |
attagtaatggtccaagccttttgcactagtgactagtgaagtatgtatacaaactatatatagcaatgttccaagcctcttgcagcagtgactagtgaa |
37558936 |
T |
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| Q |
101 |
gtatgtata---------------taaactataaaagtttgtgttataatgcaaaagtttgttggcaatttggcatggttaccaaattccttttgagaaa |
185 |
Q |
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| T |
37558937 |
gtatgtatataaactatatatatataaactataaaagtttgtgttataatgcaaaagcttgttggcaatttggcatggttaccaaattccttttgagaaa |
37559036 |
T |
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| Q |
186 |
atctacctttctgttgaactacaaatagcatcaatg |
221 |
Q |
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| T |
37559037 |
atctacctttctgttgaactacaaatagcatcaatg |
37559072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 112 - 178
Target Start/End: Complemental strand, 4444506 - 4444440
Alignment:
| Q |
112 |
aactataaaagtttgtgttataatgcaaaagtttgttggcaatttggcatggttaccaaattccttt |
178 |
Q |
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| T |
4444506 |
aactataaaggtttgttttataatgcaaaagtttgttggcaatttggcatgaataccaaattccttt |
4444440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 62 - 118
Target Start/End: Complemental strand, 4444628 - 4444573
Alignment:
| Q |
62 |
tagcaatgttccaagcctcttgcagcggtgactagtgaagtatgtatataaactata |
118 |
Q |
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| T |
4444628 |
tagcaatgttccaagcttcttgcagtagtgacta-tgaagtatatatataaactata |
4444573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 84
Target Start/End: Complemental strand, 4444624 - 4444546
Alignment:
| Q |
7 |
aatggtccaagccttttgcactagtgactagtgaagtatgtatacaaactatatgta--gcaatgttccaagcctcttgc |
84 |
Q |
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|||| ||||||| | ||||| ||||||||| |||||||| |||| ||||||||| || |||||||||||| |||||||| |
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| T |
4444624 |
aatgttccaagcttcttgcagtagtgacta-tgaagtatatatataaactatatatatagcaatgttccaaacctcttgc |
4444546 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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