View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2183_high_28 (Length: 217)
Name: NF2183_high_28
Description: NF2183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2183_high_28 |
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Alignment Details
Target: chr7 (Bit Score: 176; Significance: 5e-95; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 19 - 202
Target Start/End: Complemental strand, 10182123 - 10181940
Alignment:
| Q |
19 |
ggtatttatttgcaaagacagataaacatacaaaaagctgtaagagtgatttctttcaactataataacagacttgttattcaccaaagagaatataagc |
118 |
Q |
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| T |
10182123 |
ggtatttatttgcaaagacagacaaacatacaaaaagctgtaagagtgatttctttcaactataataacagacttgttatgcaccaaagagaatataagc |
10182024 |
T |
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| Q |
119 |
taaacagaacaacatcactctaaatagaaactcaaaaactccacataattagcatatataatttgcatgggctcaaaacctatg |
202 |
Q |
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| T |
10182023 |
taaacagaacaacatcactctaaatagaaactcaaaaactccacataattagcatatataatttgcatgggctcaaaacctatg |
10181940 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 19 - 202
Target Start/End: Complemental strand, 10187163 - 10186980
Alignment:
| Q |
19 |
ggtatttatttgcaaagacagataaacatacaaaaagctgtaagagtgatttctttcaactataataacagacttgttattcaccaaagagaatataagc |
118 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
10187163 |
ggtatttatttgcaaagacagacaaacatacaaaaagctgtaagagtgatttctttcaactataataacagacttgttatgcaccaaagagaatataagc |
10187064 |
T |
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| Q |
119 |
taaacagaacaacatcactctaaatagaaactcaaaaactccacataattagcatatataatttgcatgggctcaaaacctatg |
202 |
Q |
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| T |
10187063 |
taaacagaacaacatcactctaaatagaaactcaaaaactccacataattagcatatataatttgcatgggctcaaaacctatg |
10186980 |
T |
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