View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2183_high_29 (Length: 215)
Name: NF2183_high_29
Description: NF2183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2183_high_29 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 43131168 - 43130954
Alignment:
| Q |
1 |
aaatttccacacacaaaccttgccgtatgagtcacctttgattgttgctgaggaatctctgatttcttgacttcactatgcaaaagtatcaagattcaag |
100 |
Q |
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| T |
43131168 |
aaatttccacacacaaaccttgttgtatgagtcacctttgattgttgctgatgaatctctgatttcttgacttcactatgcaaaagtatcaagattcaag |
43131069 |
T |
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| Q |
101 |
atatataagggtgaaaatttttactatcgaataagttttattcaaattttataattgtgtttatctaaaattttcacatgcaaacctcattgcttcagcc |
200 |
Q |
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| T |
43131068 |
atatataagggtgaaaaattttactatcgaataagttttattcaaattttataattgtgtttatctaaaattttcacatgcaaacctcattgcttcagcc |
43130969 |
T |
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| Q |
201 |
atcttcgattgctgc |
215 |
Q |
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| T |
43130968 |
atcttcgattgctgc |
43130954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 40 - 211
Target Start/End: Complemental strand, 43130962 - 43130801
Alignment:
| Q |
40 |
gattgttgctgaggaatctctgatttcttgacttcactatgcaaaagtatcaagattcaagatatataagggtgaaaatttttactatcgaataagtttt |
139 |
Q |
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| T |
43130962 |
gattgctgctgaggaatctctgatgtcatgaattcactatacaaaagtatcaagat-----atagttaagggtgaaaaatt-----attgaataagtttt |
43130873 |
T |
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| Q |
140 |
attcaaattttataattgtgtttatctaaaattttcacatgcaaacctcattgcttcagccatcttcgattg |
211 |
Q |
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| T |
43130872 |
attccaatctcatgattgtgtttatctaaaattttcacatacaaacctcattgtttgagtcatctttgattg |
43130801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 129 - 195
Target Start/End: Complemental strand, 43130725 - 43130659
Alignment:
| Q |
129 |
gaataagttttattcaaattttataattgtgtttatctaaaattttcacatgcaaacctcattgctt |
195 |
Q |
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| T |
43130725 |
gaataagttttattcaaatcttataattgtatttttccaaaattttcaaacacaaacctcgttgctt |
43130659 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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