View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2183_high_3 (Length: 526)
Name: NF2183_high_3
Description: NF2183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2183_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 325; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 13 - 423
Target Start/End: Original strand, 5041192 - 5041613
Alignment:
| Q |
13 |
tgaagggttgatctttccagtcattgctctaggatttgctggaacttgaatagcctcacagtgaccacagaatctgcaccttgtatcacattttggtggc |
112 |
Q |
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| T |
5041192 |
tgaagggttgatctttccagtcattgctctaggattttctggaacttgaatagcctcacagtgaccacagaatctgcaccttgtatcacattttggtggc |
5041291 |
T |
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| Q |
113 |
cttgatcctatctgcttcctcaccatcaccttgttatcacctaatgtctgc-gaaatcaacataaattaaattcttcctacatcacccgtcttaatttga |
211 |
Q |
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| T |
5041292 |
cttgatcctatctgcttcctcaccatcaccttgttatcacctaatgtctgcacaaatcaacataaattaaattcttcctacatcactcgtcttaattaga |
5041391 |
T |
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| Q |
212 |
aaagaccgagtaaacaagttgtcggctcagtggtaagagtttgactgcaatttcaagggatatagt-aaatacctcgagaactattgtaaaatagtgatt |
310 |
Q |
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| T |
5041392 |
aaagaccgagtaaacaagttgtcggctcagaggtaagagtttgactgcaatttcaagggatatagtaaaatacctcgagaactattgtaaaatagtaatt |
5041491 |
T |
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| Q |
311 |
tgtgatacaatttaattaata---------aaannnnnnnagaagaggtagggaagtattttttatatgtaaacaaaatttacctggtgaaaaccatttt |
401 |
Q |
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| T |
5041492 |
tgtgatacaatttaattaataaaaaaaattaaaaaaatttagaagaggtagggaagtatttttcatatgtaaacaaaatttacctggtgaaaaccatttt |
5041591 |
T |
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| Q |
402 |
ggttcaaagtctttcttcctgt |
423 |
Q |
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| T |
5041592 |
ggttcaaagtctttcttcctgt |
5041613 |
T |
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Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 455 - 512
Target Start/End: Original strand, 5041648 - 5041705
Alignment:
| Q |
455 |
tgttagttgaagtaggagttatagtttctacttggaagatctaaaaattgttcatgtt |
512 |
Q |
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| T |
5041648 |
tgttagttgaagtaggagttatagtttctacttggaagatctaaaaattttacatgtt |
5041705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 59 - 123
Target Start/End: Complemental strand, 40341947 - 40341883
Alignment:
| Q |
59 |
tgaatagcctcacagtgaccacagaatctgcaccttgtatcacattttggtggccttgatcctat |
123 |
Q |
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| T |
40341947 |
tgaatagcctcacagtgtccacatgacctacaccttctatcacattttggaggtcttgaccctat |
40341883 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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