View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2183_high_6 (Length: 450)
Name: NF2183_high_6
Description: NF2183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2183_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 243; Significance: 1e-134; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 18 - 280
Target Start/End: Complemental strand, 40656500 - 40656238
Alignment:
| Q |
18 |
atttcgtgatttaaatcttcattttgcttcctaattgattatgcttacctaatgtttggatgaagaacataatgttggcaaattaaactaaactatgtga |
117 |
Q |
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| T |
40656500 |
atttcgtggtttaaatcttcattttgcttcctaattgattatgcttacctaatgtttggatgaagaacataatgttggcaaattaaactaaactatgtga |
40656401 |
T |
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| Q |
118 |
aatgcaatctctctgaaattttattatcatcgtatcataattaagccacttttcttggttaaaattaattttacgcttttagaatcaattgagtcatcaa |
217 |
Q |
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| T |
40656400 |
aatgcaatctcttcgaaattttattatcatcgtatcataattaagccacttttcttggttaatattaattttacgcttttagaatcaattgagtcatcaa |
40656301 |
T |
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| Q |
218 |
aaagtgaattcaaacatacacttaatcatccgatttttagggacagagaaagttttgttatat |
280 |
Q |
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| T |
40656300 |
aaagtggattcaaacatacacttaatcatccgatttttagggacagagaaagttttgttatat |
40656238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 285 - 434
Target Start/End: Complemental strand, 40656093 - 40655944
Alignment:
| Q |
285 |
aatataagattccaagaactaatttttgttctcttaaaacacgttctaatgaaagatagtttattcaatacataataaaagttactgaacgatgtaaagt |
384 |
Q |
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| T |
40656093 |
aatataagattccaagaactaatttttgttctcttaaaacacgttctaatgaaagatagtttattcaatacataataaaagatactgaacgatgtaaact |
40655994 |
T |
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| Q |
385 |
atttttcttattttcgaaatcagaggagtgtatatctgcgcacttacaat |
434 |
Q |
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| T |
40655993 |
atttttcttattttcgaaatcagaggagtgtatatctgcgcacttacaat |
40655944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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