View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2183_high_7 (Length: 444)
Name: NF2183_high_7
Description: NF2183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2183_high_7 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 379; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 10 - 444
Target Start/End: Original strand, 19326727 - 19327161
Alignment:
| Q |
10 |
gcacagaaacgaaaaccacaaaggaagcttttttcatcaccggttgtaaccatgcttattgttctgattgtgtcgtgctttacgttcgttcaaaaattga |
109 |
Q |
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| T |
19326727 |
gcacagaaacgaaaaccactaaggaagcttttttcatcactggttgtaaccatgcttactgctctgattgcgtcgtgctttacgttcgttcaaaaattga |
19326826 |
T |
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| Q |
110 |
agaaaatgtgatcaatgtacggcgtcctgaaagaggttgcagtggcttattggaagctgaggaatgccgggcgattttacctgtcgaggattttgatcga |
209 |
Q |
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| T |
19326827 |
agaaaatgtgatcaatgtacggtgtcctgaaagtggttgtagtggattattggaagctgaggaatgccgggcgattttacctgtcgaggattttgatcga |
19326926 |
T |
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| Q |
210 |
tggggaaaagctttatgcgaggcgatgtttgatgttaatgagaaattttactgtccatttccggattgttctgcgcttttgattaatgatgggacggagg |
309 |
Q |
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| T |
19326927 |
tgggggaaagctttatgcgaggcgatgtttgatgttaatgagaaattttactgtccatttccggattgttctgcgcttttgattaatgatgggacggagg |
19327026 |
T |
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| Q |
310 |
ctgtgctgcaatcggagtgtcccaattgtaggagattgttctgtgcacaatgtaaggtctcgtggcatgatgggatcgtgtgcagcgaatttcagaagct |
409 |
Q |
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| T |
19327027 |
ctgttctgcaatcggagtgtccaaattgtaggagattgttctgtgcacaatgtaaggtctcgtggcatgatgggatcgggtgtagcgaatttcagaagct |
19327126 |
T |
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| Q |
410 |
gaatgcggatgagagagggaagaatgatattatgt |
444 |
Q |
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| T |
19327127 |
gaatgcggatgagagagggaagaatgatattatgt |
19327161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 235 - 304
Target Start/End: Original strand, 19324808 - 19324877
Alignment:
| Q |
235 |
tgtttgatgttaatgagaaattttactgtccatttccggattgttctgcgcttttgattaatgatgggac |
304 |
Q |
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| T |
19324808 |
tgttttatgctaatgaaaaattttactgtctatttgcggattgttctacccttttgattaatgatgggac |
19324877 |
T |
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