View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2183_high_9 (Length: 366)
Name: NF2183_high_9
Description: NF2183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2183_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 30 - 357
Target Start/End: Complemental strand, 37558662 - 37558335
Alignment:
| Q |
30 |
gagacctacccaaaagatagtatagtcatttggatttcccatatagcatatttaacgaacagtaagtatccaaatcaactgggaagaagggatccttgag |
129 |
Q |
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| T |
37558662 |
gagacctgcccaaaagctagtatagtcatttggatttcccatttagcatatttaacgaacaataagtatccaaatcaactgggaagaagggatccttgag |
37558563 |
T |
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| Q |
130 |
tgatttttcagtcattttgaaagccaactccacagctgcattgttgacaaaagaataatttggtagaggttgcgaagttacaccgtagtcgtcaccatcc |
229 |
Q |
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| T |
37558562 |
tgatttttcagtcattttgaaagccaactccacagctgcattgttgacaaaagaataatttggtagaggttgcgaagttacaccatagtcgtcaccatcc |
37558463 |
T |
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| Q |
230 |
acaccaggcatcttgtcatccttctttagattaagaccttgagtgctcttcttttcatccttcttaagaacttcagggctcttctgttcatccatcttaa |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| |
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| T |
37558462 |
acaccaggcatcttgtcatccttctttagattaagaccttgagtgctcttcttttcatccttcttaagaacttcagtgctcttctgttcatccttcttaa |
37558363 |
T |
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| Q |
330 |
gatcttcagtgctcttctgtttattgtc |
357 |
Q |
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| T |
37558362 |
gatcttcagtgctcttctgtttattgtc |
37558335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 82 - 212
Target Start/End: Original strand, 4444756 - 4444886
Alignment:
| Q |
82 |
taacgaacagtaagtatccaaatcaactgggaagaagggatccttgagtgatttttcagtcattttgaaagccaactccacagctgcattgttgacaaaa |
181 |
Q |
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| T |
4444756 |
taacgatcagtaagtatcgaaatcaactgggaagaagggattcttgaatgttttttcagtcatttcaaaagccacgtttgcggctgcgttgttgacaaaa |
4444855 |
T |
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| Q |
182 |
gaataatttggtagaggttgcgaagttacac |
212 |
Q |
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| T |
4444856 |
gagtaatttgttagaggttgcaaagttacac |
4444886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 119 - 208
Target Start/End: Complemental strand, 41553892 - 41553803
Alignment:
| Q |
119 |
ggatccttgagtgatttttcagtcattttgaaagccaactccacagctgcattgttgacaaaagaataatttggtagaggttgcgaagtt |
208 |
Q |
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| T |
41553892 |
ggatccttggatgttttttctgtcattttgaaagccaagtccgctgctgcactgttgacaaaagagtaatttgatagagcttgtgaagtt |
41553803 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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