View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2183_low_11 (Length: 361)
Name: NF2183_low_11
Description: NF2183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2183_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 40532970 - 40532741
Alignment:
| Q |
1 |
tattttatttcttctgacaaaataatatttatttactcaaatttgnnnnnnnnn-tcgcaatatacaggtttataacgggaaaataaagcctgcaaattt |
99 |
Q |
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| T |
40532970 |
tattttattttttctgacaaaataatatttatttactcaaatttgaaaaaaaaaatcgcaatatccaggtttataacgggaaaataaagcctgcaaattt |
40532871 |
T |
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| Q |
100 |
atgaaaattaaagtgtttggagtagctatgatttcagaacatgtaaaagtcatttttgaatttgtaacggaaattaaagaagaaaattcgtcaatttaaa |
199 |
Q |
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| T |
40532870 |
atgaaaattaaagtgtttggagtagctatgatttcagaacatgtaaaagtcatttttgaatttgtaacggaaattaaagaagaaaattcgtcaatttaaa |
40532771 |
T |
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| Q |
200 |
ctgaacgaggaacaaaacaccaccgtcgca |
229 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
40532770 |
ctgaacgaggaacaaaacaccaccgtcgca |
40532741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 284 - 361
Target Start/End: Complemental strand, 40531967 - 40531890
Alignment:
| Q |
284 |
cttgagggggatgattaacaatgattccaaaataattattttacgctactgtaataacataggcataagtatttttta |
361 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
40531967 |
cttgagggggatgattaacaatgattccaaaataatcattttacgctactgtaataacataggcataagtatttttta |
40531890 |
T |
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