View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2183_low_12 (Length: 357)

Name: NF2183_low_12
Description: NF2183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2183_low_12
NF2183_low_12
[»] chr5 (18 HSPs)
chr5 (17-348)||(30241182-30241516)
chr5 (20-348)||(29854282-29854610)
chr5 (20-331)||(29873162-29873473)
chr5 (121-336)||(30207505-30207723)
chr5 (109-331)||(30061360-30061585)
chr5 (109-331)||(30337418-30337643)
chr5 (109-348)||(30676181-30676423)
chr5 (109-331)||(30750634-30750859)
chr5 (109-314)||(30401079-30401287)
chr5 (128-289)||(30520537-30520701)
chr5 (128-289)||(30560877-30561041)
chr5 (156-348)||(30436784-30436976)
chr5 (205-348)||(30712420-30712563)
chr5 (157-346)||(17417537-17417726)
chr5 (109-346)||(30476348-30476588)
chr5 (156-348)||(30484372-30484564)
chr5 (205-322)||(17983895-17984012)
chr5 (194-335)||(30330190-30330331)
[»] chr3 (1 HSPs)
chr3 (97-348)||(25292828-25293082)
[»] chr1 (2 HSPs)
chr1 (116-348)||(7100392-7100627)
chr1 (116-348)||(7580619-7580854)
[»] chr7 (1 HSPs)
chr7 (109-348)||(26708303-26708545)
[»] chr4 (3 HSPs)
chr4 (156-331)||(20295525-20295700)
chr4 (89-323)||(52352955-52353191)
chr4 (157-281)||(13617637-13617761)


Alignment Details
Target: chr5 (Bit Score: 260; Significance: 1e-145; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 17 - 348
Target Start/End: Original strand, 30241182 - 30241516
Alignment:
Q  17 ggtaacaggttggaagagattaacgggaggttggatgatattgctgataggaggaagaannnnnnnctacaggagggtactggaactgttcaggaaagcc 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       || ||||| |||||||||||||||| ||||||||    
T  30241182 ggtaacaggttggaagagattaacgggaggttggatgatattgctgataggaggaagaagttttttctgcaggaaggtactggaactgttcgggaaagcc 30241281  T
Q  117 caaatgaagtagctgaatggcgtcaaaccagctctatgatt---gaaccaaaagtgtttggacgagaagacgataaaaagaagattatcaggtttcttct 213  Q
    ||||||| |||||||||||||||||||||||| |||| |||   |||||||||||||||||||||||||||||||||||||||||||||  |||||||||    
T  30241282 caaatgacgtagctgaatggcgtcaaaccagcgctattattactgaaccaaaagtgtttggacgagaagacgataaaaagaagattatccagtttcttct 30241381  T
Q  214 cacccaagcaaaggactccgacttcctttccatctatcccgtttttgggttaggtggtcttggaaaaacaactcttcttcaatcgatctacaatgatgtt 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||    
T  30241382 cacccaagcaaaggactccgacttcctttccatctatcccgtttttgggttaggtggtcttggaaaaaccactcttcttcaatcggtctacaatgatgtt 30241481  T
Q  314 accgtgagtagcaattttaatactaaagtttgggt 348  Q
    |||||||||||||||||||||||||||||||||||    
T  30241482 accgtgagtagcaattttaatactaaagtttgggt 30241516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 20 - 348
Target Start/End: Complemental strand, 29854610 - 29854282
Alignment:
Q  20 aacaggttggaagagattaacgggaggttggatgatattgctgataggaggaagaannnnnnnctacaggagggtactggaactgttcaggaaagcccaa 119  Q
    ||||||||| |||||||||   |||  |||||||||||||||||||| | ||| ||       |||| ||||||||||   | |||| |||||||| |||    
T  29854610 aacaggttgaaagagattacaaggaaattggatgatattgctgatagtaagaacaagttttttctacgggagggtact---attgttaaggaaagctcaa 29854514  T
Q  120 atgaagtagctgaatggcgtcaaaccagctctatgattg---aaccaaaagtgtttggacgagaagacgataaaaagaagattatcaggtttcttctcac 216  Q
    ||||||||||||||||||||||||||||||| || ||||   ||||||||||||||||||||||||| |||||| | |||||| |   ||||||||||||    
T  29854513 atgaagtagctgaatggcgtcaaaccagctccattattgctgaaccaaaagtgtttggacgagaagatgataaagaaaagattgttgagtttcttctcac 29854414  T
Q  217 ccaagcaaaggactccgacttcctttccatctatcccgtttttgggttaggtggtcttggaaaaacaactcttcttcaatcgatctacaatgatgttacc 316  Q
    |||| | | |||||| |||||||||||| |||||||| ||||||| ||||||||| |||||||||||||||||||||||| | |||||||||||||||      
T  29854413 ccaaacgagggactcagacttcctttccgtctatcccatttttggtttaggtggtgttggaaaaacaactcttcttcaattggtctacaatgatgttagg 29854314  T
Q  317 gtgagtagcaattttaatactaaagtttgggt 348  Q
    |||||| |||||||| |||  ||| |||||||    
T  29854313 gtgagtggcaattttgataaaaaaatttgggt 29854282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 20 - 331
Target Start/End: Complemental strand, 29873473 - 29873162
Alignment:
Q  20 aacaggttggaagagattaacgggaggttggatgatattgctgataggaggaagaannnnnnnctacaggagggtactggaactgttcaggaaagcccaa 119  Q
    ||||||||| |||||||||   |||| |||||||||||||||||||| | ||| ||       |||| ||||||||||   | |||| |||||||| |||    
T  29873473 aacaggttgaaagagattacaaggagattggatgatattgctgatagtaagaacaagttttttctacgggagggtact---attgttaaggaaagctcaa 29873377  T
Q  120 atgaagtagctgaatggcgtcaaaccagctctatgattg---aaccaaaagtgtttggacgagaagacgataaaaagaagattatcaggtttcttctcac 216  Q
    ||||||||||||||||||||||||||||||| || ||||   |||||||||| |||||||||||||| |||||| | |||||| |   ||||||||||||    
T  29873376 atgaagtagctgaatggcgtcaaaccagctccattattgttgaaccaaaagtatttggacgagaagatgataaagaaaagattgttgagtttcttctcac 29873277  T
Q  217 ccaagcaaaggactccgacttcctttccatctatcccgtttttgggttaggtggtcttggaaaaacaactcttcttcaatcgatctacaatgatgttacc 316  Q
    |||||| | |||||| |||||||||||| |||||||| || |||| ||||||||| ||||||||||||||||  |||||| | |||||||||||||||      
T  29873276 ccaagcgagggactctgacttcctttccgtctatcccattgttggtttaggtggtattggaaaaacaactctcgttcaattggtctacaatgatgttagg 29873177  T
Q  317 gtgagtagcaatttt 331  Q
    |||||| ||||||||    
T  29873176 gtgagtggcaatttt 29873162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 121 - 336
Target Start/End: Complemental strand, 30207723 - 30207505
Alignment:
Q  121 tgaagtagctgaatggcgtcaaaccagctctatgattg---aaccaaaagtgtttggacgagaagacgataaaaagaagattatcaggtttcttctcacc 217  Q
    ||||||||| |||||||||||||| |||||||| ||||   |||||||||| ||||| |||||||| |||||| |||||||||||  |||||||||||||    
T  30207723 tgaagtagcagaatggcgtcaaactagctctattattgctgaaccaaaagtatttgggcgagaagatgataaagagaagattatcgagtttcttctcacc 30207624  T
Q  218 caagcaaaggactccgacttcctttccatctatcccgtttttgggttaggtggtcttggaaaaacaactcttcttcaatcgatctacaatgatgttaccg 317  Q
    ||||| | ||||||||||||||||||| |||||||| || |||| ||||||||| ||||||||||||||||| |||||| | |||||||||||| ||  |    
T  30207623 caagcgagggactccgacttcctttccgtctatcccattgttggtttaggtggtgttggaaaaacaactcttgttcaattggtctacaatgatgctaggg 30207524  T
Q  318 tgagtagcaattttaatac 336  Q
    |||||||||||||||||||    
T  30207523 tgagtagcaattttaatac 30207505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 109 - 331
Target Start/End: Complemental strand, 30061585 - 30061360
Alignment:
Q  109 ggaaagcccaaatgaagtagctgaatggcgtcaaaccagctctatgattg---aaccaaaagtgtttggacgagaagacgataaaaagaagattatcagg 205  Q
    ||||| |||| || ||||||||||| |||| |||||| |||| || ||||   ||||||||||||||||||||||||  |||||| | |||||| |   |    
T  30061585 ggaaatcccagatcaagtagctgaagggcgccaaaccggctccattattgctgaaccaaaagtgtttggacgagaagttgataaagaaaagattgttgag 30061486  T
Q  206 tttcttctcacccaagcaaaggactccgacttcctttccatctatcccgtttttgggttaggtggtcttggaaaaacaactcttcttcaatcgatctaca 305  Q
    ||||||||||||||||||| |||||| |||||||||||| |||||||| |  |||| ||||||||| ||||||||||||||||| |||||| | ||||||    
T  30061485 tttcttctcacccaagcaagggactctgacttcctttccgtctatcccatagttggtttaggtggtgttggaaaaacaactcttgttcaattggtctaca 30061386  T
Q  306 atgatgttaccgtgagtagcaatttt 331  Q
    |||||||||  |||||| ||||||||    
T  30061385 atgatgttagggtgagtggcaatttt 30061360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 109 - 331
Target Start/End: Original strand, 30337418 - 30337643
Alignment:
Q  109 ggaaagcccaaatgaagtagctgaatggcgtcaaaccagctctatgattg---aaccaaaagtgtttggacgagaagacgataaaaagaagattatcagg 205  Q
    ||||| |||| || ||||||||||| |||| |||||| |||| || ||||   ||||||||||||||||||||||||  |||||| | |||||| |   |    
T  30337418 ggaaatcccagatcaagtagctgaagggcgccaaaccggctccattattgctgaaccaaaagtgtttggacgagaagttgataaagaaaagattgttgag 30337517  T
Q  206 tttcttctcacccaagcaaaggactccgacttcctttccatctatcccgtttttgggttaggtggtcttggaaaaacaactcttcttcaatcgatctaca 305  Q
    ||||||||||||||||| |||||||| |||||||||||| |||||||| |  |||| ||||||||| ||||||||||||||||| |||||| | ||||||    
T  30337518 tttcttctcacccaagcgaaggactctgacttcctttccgtctatcccatagttggtttaggtggtgttggaaaaacaactcttgttcaattggtctaca 30337617  T
Q  306 atgatgttaccgtgagtagcaatttt 331  Q
    |||||||||  |||||| ||||||||    
T  30337618 atgatgttagggtgagtggcaatttt 30337643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 109 - 348
Target Start/End: Original strand, 30676181 - 30676423
Alignment:
Q  109 ggaaagcccaaatgaagtagctgaatggcgtcaaaccagctctatgattg---aaccaaaagtgtttggacgagaagacgataaaaagaagattatcagg 205  Q
    ||||| |||| || ||||||||||| |||| |||||| |||| || ||||   || |||||||||||||||||||||  ||| || | |||||| ||  |    
T  30676181 ggaaatcccagatcaagtagctgaagggcgccaaaccggctcaattattgctgaatcaaaagtgtttggacgagaagttgatcaagaaaagattgtcgag 30676280  T
Q  206 tttcttctcacccaagcaaaggactccgacttcctttccatctatcccgtttttgggttaggtggtcttggaaaaacaactcttcttcaatcgatctaca 305  Q
    |||||||||||||| || |||||||| |||||| ||||  |||||||| ||||||| ||||||||| ||||||||||||||||| |||||| ||||| ||    
T  30676281 tttcttctcacccatgcgaaggactctgacttcatttctgtctatcccatttttggtttaggtggtattggaaaaacaactcttgttcaattgatcttca 30676380  T
Q  306 atgatgttaccgtgagtagcaattttaatactaaagtttgggt 348  Q
    |||||||||  |||||| || ||||| |||  |||||||||||    
T  30676381 atgatgttagggtgagtggccattttgataaaaaagtttgggt 30676423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 109 - 331
Target Start/End: Complemental strand, 30750859 - 30750634
Alignment:
Q  109 ggaaagcccaaatgaagtagctgaatggcgtcaaaccagctctatgattg---aaccaaaagtgtttggacgagaagacgataaaaagaagattatcagg 205  Q
    ||||| |||| || ||||||||||| |||| |||||| |||| || ||||   ||||||||||||||||||||||||  |||||| | ||||||     |    
T  30750859 ggaaatcccagatcaagtagctgaagggcgccaaaccggctccattattgctgaaccaaaagtgtttggacgagaagttgataaagaaaagattgctgag 30750760  T
Q  206 tttcttctcacccaagcaaaggactccgacttcctttccatctatcccgtttttgggttaggtggtcttggaaaaacaactcttcttcaatcgatctaca 305  Q
    ||||||||||||||||||| |||||| |||||||||||| |||||||| |  |||| ||||||||| ||||||||||||||||| |||||| | ||||||    
T  30750759 tttcttctcacccaagcaagggactctgacttcctttccgtctatcccatagttggtttaggtggtgttggaaaaacaactcttgttcaattggtctaca 30750660  T
Q  306 atgatgttaccgtgagtagcaatttt 331  Q
    |||||||||  ||||||  |||||||    
T  30750659 atgatgttagggtgagtgacaatttt 30750634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 109 - 314
Target Start/End: Complemental strand, 30401287 - 30401079
Alignment:
Q  109 ggaaagcccaaatgaagtagctgaatggcgtcaaaccagctctatgattg---aaccaaaagtgtttggacgagaagacgataaaaagaagattatcagg 205  Q
    ||||||| || ||||||||| |||||||||||||| || ||| || ||||   ||||| |||||||||||||| |||| |||||| | |||||| |   |    
T  30401287 ggaaagctcagatgaagtagatgaatggcgtcaaatcaactccattattgctaaaccagaagtgtttggacgaaaagatgataaagaaaagatttttgag 30401188  T
Q  206 tttcttctcacccaagcaaaggactccgacttcctttccatctatcccgtttttgggttaggtggtcttggaaaaacaactcttcttcaatcgatctaca 305  Q
    |||||||||||||| || | |||||| |||||||||||| |||| ||| || |||| ||||||||| |||| |||||||||||| |||||| | ||||||    
T  30401187 tttcttctcacccatgcgagggactctgacttcctttccgtctaccccattgttggtttaggtggtattggtaaaacaactcttgttcaattggtctaca 30401088  T
Q  306 atgatgtta 314  Q
    |||||||||    
T  30401087 atgatgtta 30401079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 128 - 289
Target Start/End: Original strand, 30520537 - 30520701
Alignment:
Q  128 gctgaatggcgtcaaaccagctctatgattg---aaccaaaagtgtttggacgagaagacgataaaaagaagattatcaggtttcttctcacccaagcaa 224  Q
    ||||||||||||||||| |||||||| ||||   |||||||||| | ||| |||||||| |||||| |||||||| ||  ||||||||||||||||||||    
T  30520537 gctgaatggcgtcaaactagctctattattgctgaaccaaaagtatatggtcgagaagatgataaagagaagattgtcgagtttcttctcacccaagcaa 30520636  T
Q  225 aggactccgacttcctttccatctatcccgtttttgggttaggtggtcttggaaaaacaactctt 289  Q
    ||| ||| ||| ||||||||||||||||  || |||| ||||||||| |||| ||||||||||||    
T  30520637 agggctctgacctcctttccatctatccaattgttggcttaggtggtattgggaaaacaactctt 30520701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 128 - 289
Target Start/End: Original strand, 30560877 - 30561041
Alignment:
Q  128 gctgaatggcgtcaaaccagctctatgattg---aaccaaaagtgtttggacgagaagacgataaaaagaagattatcaggtttcttctcacccaagcaa 224  Q
    ||||||||||||||||| |||||||| ||||   |||||||||| | ||| |||||||| |||||| |||||||| ||  ||||||||||||||||||||    
T  30560877 gctgaatggcgtcaaactagctctattattgctgaaccaaaagtatatggtcgagaagatgataaagagaagattgtcgagtttcttctcacccaagcaa 30560976  T
Q  225 aggactccgacttcctttccatctatcccgtttttgggttaggtggtcttggaaaaacaactctt 289  Q
    ||| ||| ||| ||||||||||||||||  || |||| ||||||||| |||| ||||||||||||    
T  30560977 agggctctgacctcctttccatctatccaattgttggcttaggtggtattgggaaaacaactctt 30561041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 156 - 348
Target Start/End: Complemental strand, 30436976 - 30436784
Alignment:
Q  156 ttgaaccaaaagtgtttggacgagaagacgataaaaagaagattatcaggtttcttctcacccaagcaaaggactccgacttcctttccatctatcccgt 255  Q
    ||||| |||||||||| ||| |||| || |||||| | |||||| ||  ||||||||| ||||  || |||||||| |||||  ||||  ||||||||||    
T  30436976 ttgaaacaaaagtgttaggaagagacgatgataaagaaaagattgtccagtttcttcttacccttgcgaaggactctgactttatttctgtctatcccgt 30436877  T
Q  256 ttttgggttaggtggtcttggaaaaacaactcttcttcaatcgatctacaatgatgttaccgtgagtagcaattttaatactaaagtttgggt 348  Q
    | |||| ||||||||| ||||||||||||||||| |||||| |||||||||||||||||  |||||| |||||||| |||  ||| |||||||    
T  30436876 tgttggtttaggtggtattggaaaaacaactcttgttcaattgatctacaatgatgttagggtgagtcgcaattttgataaaaaaatttgggt 30436784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 205 - 348
Target Start/End: Original strand, 30712420 - 30712563
Alignment:
Q  205 gtttcttctcacccaagcaaaggactccgacttcctttccatctatcccgtttttgggttaggtggtcttggaaaaacaactcttcttcaatcgatctac 304  Q
    ||||||||||||||| || |||||||| |||||| ||||  |||||||| || |||| ||||||||| ||||||||||||||||| |||||| |||||||    
T  30712420 gtttcttctcacccatgcgaaggactctgacttcatttctgtctatcccattgttggtttaggtggtattggaaaaacaactcttgttcaattgatctac 30712519  T
Q  305 aatgatgttaccgtgagtagcaattttaatactaaagtttgggt 348  Q
    ||||||||||  |||||| |||||||| |||  ||| |||||||    
T  30712520 aatgatgttagggtgagtcgcaattttgataaaaaattttgggt 30712563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 157 - 346
Target Start/End: Original strand, 17417537 - 17417726
Alignment:
Q  157 tgaaccaaaagtgtttggacgagaagacgataaaaagaagattatcaggtttcttctcacccaagcaaaggactccgacttcctttccatctatcccgtt 256  Q
    ||||||||| ||||||||||| ||||| |||| |||||||||| |   |||||| ||||||||||||| ||| |  ||  |||||||  |||||||| |     
T  17417537 tgaaccaaaggtgtttggacgggaagatgatacaaagaagattgttgagtttctgctcacccaagcaagggattgtgaaatcctttcagtctatcccata 17417636  T
Q  257 tttgggttaggtggtcttggaaaaacaactcttcttcaatcgatctacaatgatgttaccgtgagtagcaattttaatactaaagtttgg 346  Q
     |||||||||||||| |||| |||||||||||   ||||| | |||||||||||||||  |||||||||||||||||||| ||| |||||    
T  17417637 gttgggttaggtggtattggtaaaacaactctagctcaattggtctacaatgatgttagggtgagtagcaattttaatacaaaaatttgg 17417726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 109 - 346
Target Start/End: Complemental strand, 30476588 - 30476348
Alignment:
Q  109 ggaaagcccaaatgaagtagctgaatggcgtcaaaccagctctatgattg---aaccaaaagtgtttggacgagaagacgataaaaagaagattatcagg 205  Q
    |||||| ||||||||||| ||||||||||| ||||| ||||| || ||||   |||| |||||||||||||||| ||| |||| | ||| |||| ||  |    
T  30476588 ggaaaggccaaatgaagttgctgaatggcgccaaacaagctccattattgctgaacccaaagtgtttggacgagtagatgatagagagaggattgtcgag 30476489  T
Q  206 tttcttctcacccaagcaaaggactccgacttcctttccatctatcccgtttttgggttaggtggtcttggaaaaacaactcttcttcaatcgatctaca 305  Q
    |||||||||||||||||  | |  || |||||||| |||||||||||  || ||||  |||||||| |||| |||||||| |||  ||||  | ||||||    
T  30476488 tttcttctcacccaagcgcaagtatctgacttcctatccatctatcctattgttggcctaggtggtgttggtaaaacaacacttgctcaaatggtctaca 30476389  T
Q  306 atgatgttaccgtgagtagcaattttaatactaaagtttgg 346  Q
    |||||  ||  || ||||||||||||||||| |||||||||    
T  30476388 atgatcatagggtaagtagcaattttaatacaaaagtttgg 30476348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 156 - 348
Target Start/End: Complemental strand, 30484564 - 30484372
Alignment:
Q  156 ttgaaccaaaagtgtttggacgagaagacgataaaaagaagattatcaggtttcttctcacccaagcaaaggactccgacttcctttccatctatcccgt 255  Q
    ||||| ||||||  || ||| |||| || |||||| | |||||| ||  ||||||||||||| | || ||||||||  ||||| ||||  |||||||| |    
T  30484564 ttgaatcaaaagcattaggaagagacgatgataaagaaaagattgtcgagtttcttctcacctatgcgaaggactctaacttcatttctgtctatcccat 30484465  T
Q  256 ttttgggttaggtggtcttggaaaaacaactcttcttcaatcgatctacaatgatgttaccgtgagtagcaattttaatactaaagtttgggt 348  Q
    | |||| ||||||||| ||||||||||||||||| |||||| |||||||||||||||||  |||||| |||||||| |||  ||| |||||||    
T  30484464 tgttggtttaggtggtattggaaaaacaactcttgttcaattgatctacaatgatgttagggtgagtcgcaattttgataaaaaaatttgggt 30484372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 205 - 322
Target Start/End: Complemental strand, 17984012 - 17983895
Alignment:
Q  205 gtttcttctcacccaagcaaaggactccgacttcctttccatctatcccgtttttgggttaggtggtcttggaaaaacaactcttcttcaatcgatctac 304  Q
    |||||||||||||||||| | |  ||| |||||||||||| |||||||| || |||||||||||||| |||||||||||||||||  ||||| | |||||    
T  17984012 gtttcttctcacccaagcgaggttctctgacttcctttccgtctatcccattgttgggttaggtggtgttggaaaaacaactcttgctcaattggtctac 17983913  T
Q  305 aatgatgttaccgtgagt 322  Q
    || |||| || |||||||    
T  17983912 aacgatgataacgtgagt 17983895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 194 - 335
Target Start/End: Original strand, 30330190 - 30330331
Alignment:
Q  194 aagattatcaggtttcttctcacccaagcaaaggactccgacttcctttccatctatcccgtttttgggttaggtggtcttggaaaaacaactcttcttc 293  Q
    |||||| ||| |||||||||||||||||| | |||| | ||||||||||||||||||||| |  |||| ||||| ||| |||||||||||||| || |||    
T  30330190 aagattgtcaagtttcttctcacccaagcgagggacactgacttcctttccatctatcccatagttggtttaggaggtattggaaaaacaactattgttc 30330289  T
Q  294 aatcgatctacaatgatgttaccgtgagtagcaattttaata 335  Q
     || |||| || ||||| |||  |||||| | ||||||||||    
T  30330290 gattgatccacgatgatattagggtgagtggaaattttaata 30330331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 109; Significance: 9e-55; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 97 - 348
Target Start/End: Original strand, 25292828 - 25293082
Alignment:
Q  97 tggaactgttcaggaaagcccaaatgaagtagctgaatggcgtcaaaccagctctatgattg---aaccaaaagtgtttggacgagaagacgataaaaag 193  Q
    ||||||||||  ||||||| ||| |||||||||||||| ||| ||||| || ||||| ||||   |||||||||| |||||||||||||| |||||| ||    
T  25292828 tggaactgttagggaaagctcaactgaagtagctgaatagcgccaaactagttctattattgccgaaccaaaagtatttggacgagaagatgataaagag 25292927  T
Q  194 aagattatcaggtttcttctcacccaagcaaaggactccgacttcctttccatctatcccgtttttgggttaggtggtcttggaaaaacaactcttcttc 293  Q
    |||| | ||  ||||||||| |||||||||| |||||| |||||||||||| || ||||| || |||| ||||||||| ||||||||||||||||| |||    
T  25292928 aagactgtcgagtttcttcttacccaagcaagggactctgacttcctttccgtccatcccattgttggtttaggtggtgttggaaaaacaactcttgttc 25293027  T
Q  294 aatcgatctacaatgatgttaccgtgagtagcaattttaatactaaagtttgggt 348  Q
    ||| | |||||||||||||||  |||||||||| ||||||||| ||| |||||||    
T  25293028 aattggtctacaatgatgttagggtgagtagcacttttaatacaaaaatttgggt 25293082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 78; Significance: 3e-36; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 116 - 348
Target Start/End: Complemental strand, 7100627 - 7100392
Alignment:
Q  116 ccaaatgaagtagctgaatggcgtcaaaccagctc---tatgattgaaccaaaagtgtttggacgagaagacgataaaaagaagattatcaggtttcttc 212  Q
    |||| |||||| ||||||||||| |||||||||||   |||   |||||||||  |||||||||||||||| |||||| |||||||| |   ||||||||    
T  7100627 ccaactgaagtggctgaatggcgccaaaccagctcctttattgctgaaccaaagatgtttggacgagaagatgataaagagaagattgttgagtttcttc 7100528  T
Q  213 tcacccaagcaaaggactccgacttcctttccatctatcccgtttttgggttaggtggtcttggaaaaacaactcttcttcaatcgatctacaatgatgt 312  Q
    ||||||||||||||||||| |||||||| ||| |||||||| || | || ||||||||| |||||||||||||||||  ||||| | | ||||||||||     
T  7100527 tcacccaagcaaaggactctgacttcctatccgtctatcccattgtcggtttaggtggtgttggaaaaacaactctttctcaattggtttacaatgatga 7100428  T
Q  313 taccgtgagtagcaattttaatactaaagtttgggt 348  Q
    ||  ||||||  |||||| || || ||| |||||||    
T  7100427 tagggtgagtgacaatttcaaaacaaaaatttgggt 7100392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 116 - 348
Target Start/End: Original strand, 7580619 - 7580854
Alignment:
Q  116 ccaaatgaagtagctgaatggcgtcaaaccagctctatgattg---aaccaaaagtgtttggacgagaagacgataaaaagaagattatcaggtttcttc 212  Q
    |||| |||||| ||||| ||||| ||||||||||| || ||||   ||||||| ||||||||||||||||| |||||| ||| |||| |   ||||||||    
T  7580619 ccaattgaagtggctgactggcgccaaaccagctccattattgccgaaccaaaggtgtttggacgagaagatgataaagagaggattgttgagtttcttc 7580718  T
Q  213 tcacccaagcaaaggactccgacttcctttccatctatcccgtttttgggttaggtggtcttggaaaaacaactcttcttcaatcgatctacaatgatgt 312  Q
    |||||||||| | |||||| |||||||||||| |||||||  || |||| ||||||||| |||||||||||||||||  ||||| | ||||||| ||||     
T  7580719 tcacccaagcgagggactcggacttcctttccgtctatccaattgttggtttaggtggtgttggaaaaacaactcttgctcaattggtctacaacgatga 7580818  T
Q  313 taccgtgagtagcaattttaatactaaagtttgggt 348  Q
    ||  ||||||  |||||| || || ||| |||||||    
T  7580819 tagggtgagtcacaatttcaaaacaaaaatttgggt 7580854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 109 - 348
Target Start/End: Complemental strand, 26708545 - 26708303
Alignment:
Q  109 ggaaagcccaaatgaagtagctgaatggcgtcaaaccagctctatga---ttgaaccaaaagtgtttggacgagaagacgataaaaagaagattatcagg 205  Q
    |||||||||| || ||||||||||| |||| ||||||||||| |      ||||| |||||| ||| ||| |||| || |||||| | |||||| ||  |    
T  26708545 ggaaagcccatatcaagtagctgaagggcgccaaaccagctccacccctcttgaaacaaaagcgttgggaagagacgatgataaagaaaagattgtcgag 26708446  T
Q  206 tttcttctcacccaagcaaaggactccgacttcctttccatctatcccgtttttgggttaggtggtcttggaaaaacaactcttcttcaatcgatctaca 305  Q
    |||||||||||||| || |||||||| |||||| ||||  |||||||| || |||| ||||||||| ||||||||||||||||| |||| | ||||||||    
T  26708445 tttcttctcacccatgcgaaggactctgacttcatttctgtctatcccattgttggcttaggtggtattggaaaaacaactcttgttcagttgatctaca 26708346  T
Q  306 atgatgttaccgtgagtagcaattttaatactaaagtttgggt 348  Q
    | |||||||  ||||||  ||||||| |||  ||| |||||||    
T  26708345 acgatgttagggtgagtgacaattttgataaaaaaatttgggt 26708303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 156 - 331
Target Start/End: Original strand, 20295525 - 20295700
Alignment:
Q  156 ttgaaccaaaagtgtttggacgagaagacgataaaaagaagattatcaggtttcttctcacccaagcaaaggactccgacttcctttccatctatcccgt 255  Q
    ||||| ||||||  || ||| |||| || |||||||| |||||| ||  ||||||||||||||| || |||||||| |||||| ||||  |||||||| |    
T  20295525 ttgaatcaaaagcattgggaagagacgatgataaaaaaaagattgtcgagtttcttctcacccatgcgaaggactctgacttcatttctgtctatcccat 20295624  T
Q  256 ttttgggttaggtggtcttggaaaaacaactcttcttcaatcgatctacaatgatgttaccgtgagtagcaatttt 331  Q
    | |||| ||||||||| ||||||||||||||||| ||||||   |||||||||||| |  ||||||| ||||||||    
T  20295625 tgttggtttaggtggtattggaaaaacaactcttgttcaattagtctacaatgatgatcgcgtgagtggcaatttt 20295700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 89 - 323
Target Start/End: Complemental strand, 52353191 - 52352955
Alignment:
Q  89 gagggtactggaactgttcaggaaagcccaaatgaagtagctgaatggcgtcaaaccagctc---tatgattgaaccaaaagtgtttggacgagaagacg 185  Q
    |||||||||||||||||| |||||||| ||| |||| ||||||||||||| |||||||||||   | | | |||||| ||| | ||||||||  |||| |    
T  52353191 gagggtactggaactgtt-aggaaagctcaactgaaatagctgaatggcgccaaaccagctccatttttactgaaccgaaaatctttggacggaaagaag 52353093  T
Q  186 ataaaaagaagattatcaggtttcttctcacccaagcaaaggactccgacttcctttccatctatcccgtttttgggttaggtggtcttggaaaaacaac 285  Q
    ||||| ||||||||  |  |||||||||||||||||| |   | |  |||||||||    | |||||  || |||| ||||||||| |||| ||||||||    
T  52353092 ataaagagaagattgccgagtttcttctcacccaagcgagtaagtttgacttccttgttgtgtatcctattgttggtttaggtggtgttggtaaaacaac 52352993  T
Q  286 tcttcttcaatcgatctacaatgatgttaccgtgagta 323  Q
    |||| |||||| | |||||||||||||||  |||||||    
T  52352992 tcttgttcaattggtctacaatgatgttagagtgagta 52352955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 281
Target Start/End: Complemental strand, 13617761 - 13617637
Alignment:
Q  157 tgaaccaaaagtgtttggacgagaagacgataaaaagaagattatcaggtttcttctcacccaagcaaaggactccgacttcctttccatctatcccgtt 256  Q
    |||| |||| |||||||||||| ||||  ||||| |||||||| | ||||||| |||||||||||  | || ||| ||||| |||||   ||||||| ||    
T  13617761 tgaatcaaaggtgtttggacgataagataataaagagaagattgttaggtttcatctcacccaagtgagggcctctgactttctttctgactatcccatt 13617662  T
Q  257 tttgggttaggtggtcttggaaaaa 281  Q
     |||| ||||||||| ||| |||||    
T  13617661 gttggtttaggtggtgttgcaaaaa 13617637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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