View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2183_low_14 (Length: 322)
Name: NF2183_low_14
Description: NF2183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2183_low_14 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 165; Significance: 3e-88; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 56 - 297
Target Start/End: Original strand, 19753111 - 19753354
Alignment:
| Q |
56 |
atactactgaaggtatcaatcttaatttaggatttttgggggtgttgggacgtgggcaggacaggagttttaatacatg---atcatcagcatatgaaaa |
152 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| |||| |
|
|
| T |
19753111 |
atactattgaaggtatcaatcttaatttaggatttttgggggtgttgggacgtcggcaggacaggagttttaatacatgatcatcatcagcatattaaaa |
19753210 |
T |
|
| Q |
153 |
ggtaaataagtaaccttgcttttaaaattttaattttattgaaattttaaactaaattataagatttctacgatgtgccgatcatatataaggt-atgat |
251 |
Q |
| |
|
| ||||||||||||||| |||||||||||||||||||||||||||||||||| || ||||||||| |||| ||||||||||| ||||||||| ||||| |
|
|
| T |
19753211 |
gataaataagtaaccttatttttaaaattttaattttattgaaattttaaacttaaatataagattcctacaatgtgccgatc--atataaggtgatgat |
19753308 |
T |
|
| Q |
252 |
tttattttatgtggtatttatctgcttgacaccgggggttggtgag |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | ||||||||||| |
|
|
| T |
19753309 |
tttattttatgtggtatttatctgcttgacactgagggttggtgag |
19753354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 125 - 184
Target Start/End: Complemental strand, 40499730 - 40499672
Alignment:
| Q |
125 |
ttaatacatgatcatcagcatatgaaaaggtaaataagtaaccttgcttttaaaatttta |
184 |
Q |
| |
|
||||||||||||||||| |||||| ||||||||||||| ||| |||||||| ||| |||| |
|
|
| T |
40499730 |
ttaatacatgatcatcaacatatgtaaaggtaaataag-aactttgcttttgaaacttta |
40499672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University