View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2183_low_18 (Length: 283)

Name: NF2183_low_18
Description: NF2183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2183_low_18
NF2183_low_18
[»] chr2 (4 HSPs)
chr2 (72-266)||(31182002-31182196)
chr2 (72-266)||(31201043-31201237)
chr2 (72-266)||(31219738-31219933)
chr2 (72-266)||(31247116-31247313)


Alignment Details
Target: chr2 (Bit Score: 191; Significance: 1e-104; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 72 - 266
Target Start/End: Complemental strand, 31182196 - 31182002
Alignment:
Q  72 gacagttcactcataggaaaccgattaacgggttcaatcccgaaagagcttggaaacatcagcactatgcaaaaattgtaagtaatttgcttatgtagat 171  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  31182196 gacagttcactcataggaaaccgattaacgggttcaatcccgaaagagcttggaaacatcagcactatgcaaaaattgtaagtaatttgcctatgtagat 31182097  T
Q  172 tttatgaaaactttcaagtaacttaaagtttgatacactaaatgcataggattctgaagttcaatcagttatctggagagcttccaccagagctt 266  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31182096 tttatgaaaactttcaagtaacttaaagtttgatacactaaatgcataggattctgaagttcaatcagttatctggagagcttccaccagagctt 31182002  T

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Target: chr2; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 72 - 266
Target Start/End: Complemental strand, 31201237 - 31201043
Alignment:
Q  72 gacagttcactcataggaaaccgattaacgggttcaatcccgaaagagcttggaaacatcagcactatgcaaaaattgtaagtaatttgcttatgtagat 171  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  31201237 gacagttcactcataggaaaccgattaacgggttcaatcccgaaagagcttggaaacatcagcactatgcaaaaattgtaagtaatttgcctatgtagat 31201138  T
Q  172 tttatgaaaactttcaagtaacttaaagtttgatacactaaatgcataggattctgaagttcaatcagttatctggagagcttccaccagagctt 266  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31201137 tttatgaaaactttcaagtaacttaaagtttgatacactaaatgcataggattctgaagttcaatcagttatctggagagcttccaccagagctt 31201043  T

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Target: chr2; HSP #3
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 72 - 266
Target Start/End: Complemental strand, 31219933 - 31219738
Alignment:
Q  72 gacagttcactcataggaaaccgattaacgggttcaatcccgaaagagcttggaaacatcagcactatgcaaaaattgtaagtaatttgcttatgtagat 171  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |  ||||| ||    
T  31219933 gacagttcactcataggaaaccgattaacgggttcaatcccgaaagagcttggaaacatcagcaccatgcaaaaattgtaagtaattttcccatgtaaat 31219834  T
Q  172 tttatgaaaactttcaagtaactt-aaagtttgatacactaaatgcataggattctgaagttcaatcagttatctggagagcttccaccagagctt 266  Q
    |||||||||| ||||||| ||||| ||||||||| || |||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||    
T  31219833 tttatgaaaattttcaaggaacttaaaagtttgaaaccctaaatgcataggattctgaagttcaatcagttatctggagatcttccaccggagctt 31219738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 72 - 266
Target Start/End: Complemental strand, 31247313 - 31247116
Alignment:
Q  72 gacagttcactcataggaaaccgattaacgggttcaatcccgaaagagcttggaaacatcagcactatgcaaaaattgtaagtaatttgcttatgtagat 171  Q
    |||||||||||  ||||||| || ||||| ||| |||| || ||||| |||||||| |||| |||  || |||  ||||||||||||| ||||| | |||    
T  31247313 gacagttcactattaggaaatcgtttaactggtccaattccaaaagaacttggaaaaatcatcaccctgaaaagcttgtaagtaattttcttatttcgat 31247214  T
Q  172 tttatgaaaact-ttcaagtaacttaaagt--ttgatacactaaatgcataggattctgaagttcaatcagttatctggagagcttccaccagagctt 266  Q
    ||| |||||| |  ||||| |||||| | |  |||| ||   ||||||||||| ||||  |||||||||| ||||||||| ||||||| || ||||||    
T  31247213 tttttgaaaattgctcaaggaacttataattattgaaacttgaaatgcatagggttctagagttcaatcaattatctggacagcttcctccggagctt 31247116  T

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