View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2183_low_20 (Length: 254)
Name: NF2183_low_20
Description: NF2183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2183_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 111; Significance: 4e-56; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 113 - 239
Target Start/End: Original strand, 43226565 - 43226691
Alignment:
| Q |
113 |
actcaagctccaatgccacaaaatcaccttgacttgctccaccatttcatcaactccacacaccttctcattgaaaattcgatcatttctcatcttctaa |
212 |
Q |
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| T |
43226565 |
actcaagctccaatgccacaaaatcaccttgacttgctccaccatttcatcaactccacacaccttctcattaaatatgcgatcaattctcatcttctaa |
43226664 |
T |
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| Q |
213 |
accacccacacgacggcgtgccaaatt |
239 |
Q |
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| T |
43226665 |
accacccacacgacggcgtgccaaatt |
43226691 |
T |
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Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 78 - 125
Target Start/End: Original strand, 43226458 - 43226505
Alignment:
| Q |
78 |
ccaccaccaccaaatgccgcaactgtaaaccaaccactcaagctccaa |
125 |
Q |
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| T |
43226458 |
ccaccaccaccaaatgccgcaactgtaaaccaaccactcaagctccaa |
43226505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 135 - 209
Target Start/End: Complemental strand, 16256842 - 16256768
Alignment:
| Q |
135 |
atcaccttgacttgctccaccatttcatcaactccacacaccttctcattgaaaattcgatcatttctcatcttc |
209 |
Q |
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|||||||||||||| ||||||||||||||||| ||||| || || | ||| |||| | |||||||||||||||| |
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| T |
16256842 |
atcaccttgacttgatccaccatttcatcaaccccacaaactttgttattaaaaaccctatcatttctcatcttc |
16256768 |
T |
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