View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2183_low_21 (Length: 250)
Name: NF2183_low_21
Description: NF2183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2183_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 40318123 - 40317884
Alignment:
| Q |
1 |
ttataatgtgtgtatatagtactatatgtcccaattattaagccaaaaattagaaggggtataggtaagttgtataagtcaaagcctcttctagctctgt |
100 |
Q |
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| T |
40318123 |
ttataatgtgtgtatatagtactatatgtcccaattattaagccaaaaattagaaggggtataggtaagttgtataagtcaaagcctcttctagctctgt |
40318024 |
T |
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| Q |
101 |
tggcattgtatgtgattttacgaaagccgttattgtgatcaattgatgaataataaacaatttatttgtgtttttaggtaaataaataatttactgtaat |
200 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40318023 |
tggcattgtatgtgattttacgaaagccattattgtgatcaattgatgaataataaacaatttatttgtgtttttaggtaaataaataatttactgtaat |
40317924 |
T |
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| Q |
201 |
atagcaagtatcaatgtatatgaaataaagttttcctatg |
240 |
Q |
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||||||||||||||| |||||| ||||||||||||||||| |
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| T |
40317923 |
atagcaagtatcaatatatatggaataaagttttcctatg |
40317884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 40328197 - 40327958
Alignment:
| Q |
1 |
ttataatgtgtgtatatagtactatatgtcccaattattaagccaaaaattagaaggggtataggtaagttgtataagtcaaagcctcttctagctctgt |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40328197 |
ttataatgtgtgtatatagtactatatgtcccaattattaagccaaaaattagaaggggtataggtaagttgtataagtcaaagcctcttctagctctgt |
40328098 |
T |
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| Q |
101 |
tggcattgtatgtgattttacgaaagccgttattgtgatcaattgatgaataataaacaatttatttgtgtttttaggtaaataaataatttactgtaat |
200 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40328097 |
tggcattgtatgtgattttacgaaagccattattgtgatcaattgatgaataataaacaatttatttgtgtttttaggtaaataaataatttactgtaat |
40327998 |
T |
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| Q |
201 |
atagcaagtatcaatgtatatgaaataaagttttcctatg |
240 |
Q |
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||||||||||||||| |||||| ||||||||||||||||| |
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| T |
40327997 |
atagcaagtatcaatatatatggaataaagttttcctatg |
40327958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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