View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2183_low_24 (Length: 239)
Name: NF2183_low_24
Description: NF2183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2183_low_24 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 40328254 - 40328474
Alignment:
| Q |
1 |
tgccgacgaattgaattaatgtttataaatatatgtatagtttggttttggacatttaaatgcctgaaagacactcatgtggggtcattgggtaccttga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40328254 |
tgccgacgaattgaattaatgtttataaatatatgtatagtttggttttggacatttaaatgcctgaaagacactcatgtggggtcattgggtaccttga |
40328353 |
T |
|
| Q |
101 |
tttatcttgacaataatcatagatcacatggttcatacgaacccacctataccttctagcttcaatggcactaagagcttgatattcaaccccttcccac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40328354 |
tttatcttgacaataatcatagatcacatggttcatacgaacccacctataccttctagcttcaatggcactaagagcttgatattcaaccccttcccac |
40328453 |
T |
|
| Q |
201 |
caatttcttgggttagtggaa |
221 |
Q |
| |
|
|||||| |||||||||||||| |
|
|
| T |
40328454 |
caattttttgggttagtggaa |
40328474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 40318180 - 40318400
Alignment:
| Q |
1 |
tgccgacgaattgaattaatgtttataaatatatgtatagtttggttttggacatttaaatgcctgaaagacactcatgtggggtcattgggtaccttga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40318180 |
tgccgacgaattgaattaatgtttataaatatatgtatagtttggttttggacatttaaatgcctgaaagacactcatgtggggtcattgggtaccttga |
40318279 |
T |
|
| Q |
101 |
tttatcttgacaataatcatagatcacatggttcatacgaacccacctataccttctagcttcaatggcactaagagcttgatattcaaccccttcccac |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
40318280 |
tttatcttgacaataatcatagatcacatggttcatacgaacccacctatatcttctagcttcaatggcactaagagcttgatattcaactccttcccac |
40318379 |
T |
|
| Q |
201 |
caatttcttgggttagtggaa |
221 |
Q |
| |
|
|||||| |||||||||||||| |
|
|
| T |
40318380 |
caattttttgggttagtggaa |
40318400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 40308712 - 40308933
Alignment:
| Q |
1 |
tgccgacgaattgaattaatgtttataaa-tatatgtatagtttggttttggacatttaaatgcctgaaagacactcatgtggggtcattgggtaccttg |
99 |
Q |
| |
|
||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40308712 |
tgccgacgagttgaattaatgtttataaaatatatgtatagtttggttttggacatttaaatgcctgaaagacactcatgtggggtcattgggtaccttg |
40308811 |
T |
|
| Q |
100 |
atttatcttgacaataatcatagatcacatggttcatacgaacccacctataccttctagcttcaatggcactaagagcttgatattcaaccccttccca |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
40308812 |
atttatcttgacaataatcatagatcacatggttcatacgaacccacctatatcttctagcttcaatggcactaagagcttgatattcaactccttccca |
40308911 |
T |
|
| Q |
200 |
ccaatttcttgggttagtggaa |
221 |
Q |
| |
|
||||||| |||||||||||||| |
|
|
| T |
40308912 |
ccaattttttgggttagtggaa |
40308933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University