View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2183_low_4 (Length: 523)
Name: NF2183_low_4
Description: NF2183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2183_low_4 |
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| [»] scaffold2079 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 339; Significance: 0; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 19 - 504
Target Start/End: Original strand, 6346388 - 6346874
Alignment:
| Q |
19 |
atccaagcaattgtatgagaaatcatcatcaaagcaagaactgaaacaacacttccaagtaaaacaataaccatcatgaatggaaggaagctcttgatgt |
118 |
Q |
| |
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||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
6346388 |
atccaagcaattgtaggagaaatcatcatcaaagctagaactgaaacaacacttccaagtaaaacaataaccatcatgaatggaaggaagttcttgatgt |
6346487 |
T |
|
| Q |
119 |
gaatctggaacgttgtaataagcaccaaaaccatgaagaaaagagcaaccatgaaaactaaagcaaacagaagtggtgatttctccatacttgcatttgt |
218 |
Q |
| |
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||| ||| | | |||| | |||||||||||||| | || ||||||||||||||||||| ||||| | ||||||||||||||| || ||||||| ||| || |
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| T |
6346488 |
gaagctgtagcattgtcacaagcaccaaaaccaagtagtaaagagcaaccatgaaaaccaaagccatcagaagtggtgatttttcgatacttgtattcgt |
6346587 |
T |
|
| Q |
219 |
tgttgcaaacccgattattgcaaacaatagctcaaaaaattggccaaatagttttccaacttcattcaagctagaaagggttgaataaattcaagaaaag |
318 |
Q |
| |
|
|||||||||||| |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6346588 |
tgttgcaaacccaattattgcgaacaatagctcaaaaaattggcttaatagttttccaacttcattcaagctagaaagggttgaataaattcaagaaaat |
6346687 |
T |
|
| Q |
319 |
aaaatgttagcaatagtatatttaataacttcaaagtagaagagttacc-aataaaaaggagaaacatagcaagttaatgttttagtagtgaattatgag |
417 |
Q |
| |
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||||||||||||||||||||||||||||||| || |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
6346688 |
aaaatgttagcaatagtatatttaataacttgaatgtagaagagttaccaaataaaaaagagaaacatagcaagttaatgttttagtagtgaattatgag |
6346787 |
T |
|
| Q |
418 |
ctgagaattgaacttattaaccttgttgaagttgaattgaacacggtcgcatttactgctgtagttccttgtgccattgttcctctt |
504 |
Q |
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|||||||||||||| ||| |||||||||||||||||||||||||||| |||| | || ||| |||||||||||||||||||||||| |
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| T |
6346788 |
ctgagaattgaactaatttaccttgttgaagttgaattgaacacggttgcatatgatgttgtggttccttgtgccattgttcctctt |
6346874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 19 - 179
Target Start/End: Complemental strand, 6219722 - 6219562
Alignment:
| Q |
19 |
atccaagcaattgtatgagaaatcatcatcaaagcaagaactgaaacaacacttccaagtaaaacaataaccatcatgaatggaaggaagctcttgatgt |
118 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6219722 |
atccaagcaattgtaggagaaatcatcatcaaagctagaactgaaacaacacttccaagtaaaacaataaccatcatgaatggaaggaagctcttgatgt |
6219623 |
T |
|
| Q |
119 |
gaatctggaacgttgtaataagcaccaaaaccatgaagaaaagagcaaccatgaaaactaa |
179 |
Q |
| |
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||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6219622 |
gaatctgtaacattgtaataagcaccaaaaccatgaagaaaagagcaaccatgaaaactaa |
6219562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 60 - 317
Target Start/End: Complemental strand, 6242845 - 6242588
Alignment:
| Q |
60 |
tgaaacaacacttccaagtaaaacaataaccatcatgaatggaaggaagctcttgatgtgaatctggaacgttgtaataagcaccaaaaccatgaagaaa |
159 |
Q |
| |
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||||| ||||||||||||||||| ||| ||||||||| |||||||||| || |||||||||| ||| ||| |||| | |||||||||| | | | || || |
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| T |
6242845 |
tgaaataacacttccaagtaaaagaattaccatcatgtatggaaggaaactattgatgtgaagctgtaacattgtcacaagcaccaaagctaggtagtaa |
6242746 |
T |
|
| Q |
160 |
agagcaaccatgaaaactaaagcaaacagaagtggtgatttctccatacttgcatttgttgttgcaaacccgattattgcaaacaatagctcaaaaaatt |
259 |
Q |
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||| || |||||| ||||| | || ||| | ||||| | | |||| ||| ||| ||||||||||| |||||||||||||||| ||||||| |
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| T |
6242745 |
agaaaaatagcgaaaaccaaagccatcatcagtagagattttccgttgcttgtattcattgctgcaaacccgacgattgcaaacaatagcttgaaaaatt |
6242646 |
T |
|
| Q |
260 |
ggccaaatagttttccaacttcattcaagctagaaagggttgaataaattcaagaaaa |
317 |
Q |
| |
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||||||||| || ||||||||||||||| |||||||||||||||| |||||||||||| |
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| T |
6242645 |
ggccaaataattctccaacttcattcaatctagaaagggttgaatgaattcaagaaaa |
6242588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 19 - 182
Target Start/End: Original strand, 6333271 - 6333434
Alignment:
| Q |
19 |
atccaagcaattgtatgagaaatcatcatcaaagcaagaactgaaacaacacttccaagtaaaacaataaccatcatgaatggaaggaagctcttgatgt |
118 |
Q |
| |
|
||||||||||||||| ||||||| ||||||||||| | |||||||||||||||||||||||||| ||| | |||| || | |||| ||| |||||||||| |
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|
| T |
6333271 |
atccaagcaattgtaggagaaattatcatcaaagctaaaactgaaacaacacttccaagtaaaagaatgatcatcttggaaggaaagaaactcttgatgt |
6333370 |
T |
|
| Q |
119 |
gaatctggaacgttgtaataagcaccaaaaccatgaagaaaagagcaaccatgaaaactaaagc |
182 |
Q |
| |
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||| || ||| ||| | |||||||||| ||| | || |||||| |||||||||||||||||| |
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| T |
6333371 |
gaaaatgcaacaatgtcacaagcaccaaagccaggtagtaaagagaaaccatgaaaactaaagc |
6333434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 223 - 317
Target Start/End: Original strand, 6326013 - 6326107
Alignment:
| Q |
223 |
gcaaacccgattattgcaaacaatagctcaaaaaattggccaaatagttttccaacttcattcaagctagaaagggttgaataaattcaagaaaa |
317 |
Q |
| |
|
||||||||||| ||||||||||||||||| |||||||||||||||| |||||| ||||| ||||| ||||||| |||||||| |||||||||||| |
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|
| T |
6326013 |
gcaaacccgatgattgcaaacaatagctcgaaaaattggccaaataattttcccacttctttcaatctagaaatggttgaatgaattcaagaaaa |
6326107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 223 - 333
Target Start/End: Original strand, 6333490 - 6333599
Alignment:
| Q |
223 |
gcaaacccgattattgcaaacaatagctcaaaaaattggccaaatagttttccaacttcattcaagctagaaagggttgaataaattcaagaaaagaaaa |
322 |
Q |
| |
|
||||||||||| ||||||||||||||||| |||||||||||||||| |||||| ||||| ||||| ||||||| |||||||| |||||||| |||| ||| |
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|
| T |
6333490 |
gcaaacccgatgattgcaaacaatagctcgaaaaattggccaaataattttcccacttctttcaatctagaaatggttgaatgaattcaag-aaagtaaa |
6333588 |
T |
|
| Q |
323 |
tgttagcaata |
333 |
Q |
| |
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|||||| |||| |
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|
| T |
6333589 |
tgttaggaata |
6333599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 19 - 182
Target Start/End: Original strand, 6325794 - 6325957
Alignment:
| Q |
19 |
atccaagcaattgtatgagaaatcatcatcaaagcaagaactgaaacaacacttccaagtaaaacaataaccatcatgaatggaaggaagctcttgatgt |
118 |
Q |
| |
|
||||| |||||||| | ||||| | ||| ||||| | || ||||||||||||||||||||||| ||| | |||| || | |||| ||| |||||||||| |
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|
| T |
6325794 |
atccatgcaattgtcggcgaaataaccattaaagctaaaattgaaacaacacttccaagtaaaagaatgatcatcttggaaggaatgaatctcttgatgt |
6325893 |
T |
|
| Q |
119 |
gaatctggaacgttgtaataagcaccaaaaccatgaagaaaagagcaaccatgaaaactaaagc |
182 |
Q |
| |
|
|||| || | | |||| | |||||||||| ||| | || |||||| |||||||||||||||||| |
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|
| T |
6325894 |
gaatatgtatcattgttacaagcaccaaagccaggtagtaaagagaaaccatgaaaactaaagc |
6325957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 278 - 340
Target Start/End: Complemental strand, 6219457 - 6219395
Alignment:
| Q |
278 |
cttcattcaagctagaaagggttgaataaattcaagaaaagaaaatgttagcaatagtatatt |
340 |
Q |
| |
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||||| ||||||||||||| ||||||| ||||||| || | ||||||||| ||||||||||| |
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|
| T |
6219457 |
cttcagtcaagctagaaagagttgaatcaattcaaaaatatcaaatgttaggaatagtatatt |
6219395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2079 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: scaffold2079
Description:
Target: scaffold2079; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 222 - 308
Target Start/End: Complemental strand, 909 - 823
Alignment:
| Q |
222 |
tgcaaacccgattattgcaaacaatagctcaaaaaattggccaaatagttttccaacttcattcaagctagaaagggttgaataaat |
308 |
Q |
| |
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||||||||||| |||||||||||| ||| |||||||||||||||| || ||||||||||||||| |||||||||||||||||||| |
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|
| T |
909 |
tgcaaacccgacgattgcaaacaattgcttgaaaaattggccaaataattctccaacttcattcaatctagaaagggttgaataaat |
823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2079; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 19 - 121
Target Start/End: Complemental strand, 1094 - 992
Alignment:
| Q |
19 |
atccaagcaattgtatgagaaatcatcatcaaagcaagaactgaaacaacacttccaagtaaaacaataaccatcatgaatggaaggaagctcttgatgt |
118 |
Q |
| |
|
|||||||||||||| | ||||| | |||||| || | || ||||||||||||||||||||||| ||| |||||||||||||| ||||| || ||||||| |
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| T |
1094 |
atccaagcaattgtcggcgaaataaccatcaatgctaaaattgaaacaacacttccaagtaaaagaattaccatcatgaatgggaggaaactattgatgt |
995 |
T |
|
| Q |
119 |
gaa |
121 |
Q |
| |
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||| |
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|
| T |
994 |
gaa |
992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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