View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2183_low_5 (Length: 509)
Name: NF2183_low_5
Description: NF2183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2183_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 425; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 11 - 493
Target Start/End: Complemental strand, 40182079 - 40181591
Alignment:
| Q |
11 |
cataggttagagttcaacattctcaatcgctcagtaaacctaaacctagccgtgtgtgtgccgtttgtctccaaccgattctcactcgcaaactatatat |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
40182079 |
cataggttagagttcaacattctcaatcgctcagtaaacctaaacctagccgtgtgtgtgccgtctgtctccaaccgattctcactcgcaaactatatat |
40181980 |
T |
|
| Q |
111 |
aagaagatgtgggtgtcgtttgcagcaagatatggcaggaactacatcacttcttctt------cttcctcctcatcatcatccacacgaagaattccta |
204 |
Q |
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| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |
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| T |
40181979 |
atgcagatgtgggtgtcgtttgcagcaagatatggcaggaactacatcacttcttcttcttcttcttcctccttatcatcatccacacgaagaattccta |
40181880 |
T |
|
| Q |
205 |
accctaacaaggtcattttctccaactttctaagtcaatcatcatcatcatccacttcatgtaatccctcgtttacatatcgtgacaacgacgacaacgt |
304 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40181879 |
accctaacaaggtcattttctccaactttctaagtcaatcatcatcatcatccacttcatgtaatccctcgtttacatatcgtgacaacgacgacaacgt |
40181780 |
T |
|
| Q |
305 |
catcaccgcctccaaagatttccagaaagtgatgagtcttcttagtaatgcttctacacgtgggcgcaggtacaacaaagacttgaccaatctagttcaa |
404 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40181779 |
catcaccgcctccaaagatttacagaaagtgatgagtcttcttagtaatgcttctacacgtgggcgcaggtacaacaaagacttgaccaatctagttcaa |
40181680 |
T |
|
| Q |
405 |
catcatcaacaaaactttctaatcaaagttattgaaacctcttgtcaaactaaattagctgaaaccctaaaagttccacctcagaatct |
493 |
Q |
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| T |
40181679 |
catcatcaacaacactttctaatcagtgttattgaaacctcttgtcaaactaaattagctgaaaccctagaagttccacctcagaatct |
40181591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 408 - 469
Target Start/End: Complemental strand, 40180999 - 40180938
Alignment:
| Q |
408 |
catcaacaaaactttctaatcaaagttattgaaacctcttgtcaaactaaattagctgaaac |
469 |
Q |
| |
|
||||||||| | ||| || ||||||||||| |||||||||||||||||||||| | |||||| |
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| T |
40180999 |
catcaacaacattttttactcaaagttattaaaacctcttgtcaaactaaatttgttgaaac |
40180938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 321 - 356
Target Start/End: Complemental strand, 38606264 - 38606229
Alignment:
| Q |
321 |
gatttccagaaagtgatgagtcttcttagtaatgct |
356 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||| |
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| T |
38606264 |
gatttccataaagtgatgagtcttcttagtaatgct |
38606229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 427 - 471
Target Start/End: Complemental strand, 38606137 - 38606093
Alignment:
| Q |
427 |
tcaaagttattgaaacctcttgtcaaactaaattagctgaaaccc |
471 |
Q |
| |
|
||||||||||| |||||||||||||||| ||||||| | |||||| |
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|
| T |
38606137 |
tcaaagttattcaaacctcttgtcaaaccaaattagttcaaaccc |
38606093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 439 - 487
Target Start/End: Original strand, 41885617 - 41885665
Alignment:
| Q |
439 |
aaacctcttgtcaaactaaattagctgaaaccctaaaagttccacctca |
487 |
Q |
| |
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||||||||||||||| |||||||| | |||||| ||| ||||||||||| |
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| T |
41885617 |
aaacctcttgtcaaattaaattagttcaaaccccaaatgttccacctca |
41885665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 402 - 493
Target Start/End: Original strand, 44459244 - 44459335
Alignment:
| Q |
402 |
caacatcatcaacaaaactttctaatcaaagttattgaaacctcttgtcaaactaaattagctgaaaccctaaaagttccacctcagaatct |
493 |
Q |
| |
|
|||||||| |||||| ||||| | | |||||||||||||||||||||||||||||||| | |||| ||| ||| |||| |||||| ||||| |
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| T |
44459244 |
caacatcaacaacaacactttgcacttaaagttattgaaacctcttgtcaaactaaatttgttgaagccccaaaggttcaacctcataatct |
44459335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 402 - 493
Target Start/End: Original strand, 44466777 - 44466868
Alignment:
| Q |
402 |
caacatcatcaacaaaactttctaatcaaagttattgaaacctcttgtcaaactaaattagctgaaaccctaaaagttccacctcagaatct |
493 |
Q |
| |
|
|||||||| |||||| ||||| | | |||||||||||||||||||||||||||||||| | |||| ||| ||| |||| |||||| ||||| |
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| T |
44466777 |
caacatcaacaacaacactttgcacttaaagttattgaaacctcttgtcaaactaaatttgttgaagccccaaaggttcaacctcataatct |
44466868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 427 - 493
Target Start/End: Complemental strand, 34502688 - 34502622
Alignment:
| Q |
427 |
tcaaagttattgaaacctcttgtcaaactaaattagctgaaaccctaaaagttccacctcagaatct |
493 |
Q |
| |
|
|||||||||||||| |||||| ||||||||||||| ||||||||| ||| ||| | ||||| ||||| |
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| T |
34502688 |
tcaaagttattgaagcctcttctcaaactaaattaactgaaaccccaaaggtttcgcctcataatct |
34502622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 321 - 352
Target Start/End: Original strand, 44459145 - 44459176
Alignment:
| Q |
321 |
gatttccagaaagtgatgagtcttcttagtaa |
352 |
Q |
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|
|||||||||||||||||||||||||||||||| |
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| T |
44459145 |
gatttccagaaagtgatgagtcttcttagtaa |
44459176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 321 - 352
Target Start/End: Original strand, 44466678 - 44466709
Alignment:
| Q |
321 |
gatttccagaaagtgatgagtcttcttagtaa |
352 |
Q |
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|
|||||||||||||||||||||||||||||||| |
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| T |
44466678 |
gatttccagaaagtgatgagtcttcttagtaa |
44466709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 408 - 493
Target Start/End: Original strand, 46358821 - 46358906
Alignment:
| Q |
408 |
catcaacaaaactttctaatcaaagttattgaaacctcttgtcaaactaaattagctgaaaccctaaaagttccacctcagaatct |
493 |
Q |
| |
|
||||||||| ||||| | | |||||||||||||||||||||||||||||||| | |||| ||| ||| |||| |||||| ||||| |
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| T |
46358821 |
catcaacaacactttgcacttaaagttattgaaacctcttgtcaaactaaatttgttgaagccccaaaggttcaacctcataatct |
46358906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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