View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2183_low_6 (Length: 473)

Name: NF2183_low_6
Description: NF2183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2183_low_6
NF2183_low_6
[»] chr5 (2 HSPs)
chr5 (1-457)||(12616164-12616625)
chr5 (102-223)||(34946014-34946135)
[»] chr4 (3 HSPs)
chr4 (136-230)||(51108601-51108694)
chr4 (109-182)||(31858402-31858474)
chr4 (130-194)||(35345268-35345332)
[»] chr3 (2 HSPs)
chr3 (107-220)||(32809939-32810052)
chr3 (135-194)||(2453645-2453705)
[»] chr8 (1 HSPs)
chr8 (130-185)||(29775735-29775790)
[»] chr7 (2 HSPs)
chr7 (130-230)||(31255759-31255860)
chr7 (164-221)||(28288932-28288990)
[»] chr2 (1 HSPs)
chr2 (189-230)||(28317722-28317763)


Alignment Details
Target: chr5 (Bit Score: 313; Significance: 1e-176; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 457
Target Start/End: Complemental strand, 12616625 - 12616164
Alignment:
Q  1 caatcgaatcaatatttctaaataaaattgcaatgaggaatttaaaattgggatctagctaaggattatagttattttatagatcgcagacaaaacctca 100  Q
    ||||||||||||||||| |||||||||||||||||| ||||||||||||| ||||||| ||||||||||||||    | |||||||||||||||||||||    
T  12616625 caatcgaatcaatatttttaaataaaattgcaatgaagaatttaaaattgagatctagttaaggattatagtt----tgtagatcgcagacaaaacctca 12616530  T
Q  101 tttttcttttctctttgaaggatttgaaataagaattaatgcaattaaacctagaaacttaaatgtttaatgtccaatatattgaattaaaaaaggatat 200  Q
    |||||||||||||||||||||||||||||||||||||| |||| ||||||||| |||||||| |||||| ||||||||||||||||| ||||||| ||||    
T  12616529 tttttcttttctctttgaaggatttgaaataagaattagtgcagttaaacctaaaaacttaattgtttagtgtccaatatattgaataaaaaaagtatat 12616430  T
Q  201 tatacaacatcatataaagttcacacaaaatacgtatat-----------tacgtactaatataaaataaaataaaatgtttggaacaattgaacgtggc 289  Q
    |||||||||||||||||||||||||||||||||||||||           ||||||||||||||||| |||| ||||||||||||||||||||||||||     
T  12616429 tatacaacatcatataaagttcacacaaaatacgtatatagtagtagtaatacgtactaatataaaa-aaaaaaaaatgtttggaacaattgaacgtgga 12616331  T
Q  290 ttttgttgattcctcttctaactccgtcccaggatttgaactaagttgggtttctaatatttttactaaatgtacctcactcataatatacatcttataa 389  Q
    |||||||||||||  ||||||||||||||| ||||||||||| ||||||||| |||||| |||||||||||| |||||||||||||||||||||||||||    
T  12616330 ttttgttgattccctttctaactccgtccctggatttgaacttagttgggttgctaata-ttttactaaatgcacctcactcataatatacatcttataa 12616232  T
Q  390 agcttcatctacatcgcaactttgtgaaccaacgtggcatacgaagtcaaatacttcaaggtagtaag 457  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  12616231 agcttcatctacatcgcaactttgtgaaccaacgtggcatatgaagtcaaatacttcaaggtagtaag 12616164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 102 - 223
Target Start/End: Original strand, 34946014 - 34946135
Alignment:
Q  102 ttttcttttctctttgaaggatttgaaataagaattaatgcaattaaacctagaaacttaaatgtttaatgtccaatatattgaattaaaaaaggatatt 201  Q
    |||| |||||||||| | |||| |||  |||| |||| |||||||||||||| ||| ||||  |||||| ||| |||||||||| | |||||||   |||    
T  34946014 tttttttttctcttttagggatatgagttaaggattagtgcaattaaacctaaaaatttaagagtttaaggtctaatatattgagtaaaaaaagttcatt 34946113  T
Q  202 atacaacatcatataaagttca 223  Q
    ||| ||||||||||||||||||    
T  34946114 atataacatcatataaagttca 34946135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 136 - 230
Target Start/End: Complemental strand, 51108694 - 51108601
Alignment:
Q  136 ttaatgcaattaaacctagaaacttaaatgtttaatgtccaatatattgaattaaaaaaggatattatacaacatcatataaagttcacacaaaa 230  Q
    ||||||||||||||| |||||| |||| ||||||| ||  |||||||||| | || || |  |||||||||||||||||||||||||||| ||||    
T  51108694 ttaatgcaattaaacttagaaaattaagtgtttaaagttaaatatattgagt-aataatgtttattatacaacatcatataaagttcacaaaaaa 51108601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 182
Target Start/End: Original strand, 31858402 - 31858474
Alignment:
Q  109 ttctctttgaaggatttgaaataagaattaatgcaattaaacctagaaacttaaatgtttaatgtccaatatat 182  Q
    |||||||| ||||||||||  |||  |||| ||||||||||| ||||||||| ||| ||||| |||||||||||    
T  31858402 ttctcttttaaggatttgagttaaatattagtgcaattaaacttagaaactt-aatctttaaggtccaatatat 31858474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 130 - 194
Target Start/End: Complemental strand, 35345332 - 35345268
Alignment:
Q  130 taagaattaatgcaattaaacctagaaacttaaatgtttaatgtccaatatattgaattaaaaaa 194  Q
    ||||||||| || ||||||||||| |||||||||||||| |  ||||  ||||||||| ||||||    
T  35345332 taagaattagtgtaattaaacctaaaaacttaaatgtttgagttccacaatattgaatcaaaaaa 35345268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 107 - 220
Target Start/End: Original strand, 32809939 - 32810052
Alignment:
Q  107 ttttctctttgaaggatttgaaataagaattaatgcaattaaacctagaaacttaaatgtttaatgtccaatatattgaattaaaaaaggatattataca 206  Q
    |||||||||| ||||||||||  |||| | || |||||||||||||| |||||||| || |||   ||||||||||||| | ||||||||  ||| || |    
T  32809939 ttttctcttttaaggatttgagttaaggaatagtgcaattaaacctaaaaacttaagtgattatgatccaatatattgagtgaaaaaaggcaattgtata 32810038  T
Q  207 acatcatataaagt 220  Q
     |||||||||||||    
T  32810039 gcatcatataaagt 32810052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 135 - 194
Target Start/End: Original strand, 2453645 - 2453705
Alignment:
Q  135 attaatgcaattaaacctagaaacttaaatgtttaatg-tccaatatattgaattaaaaaa 194  Q
    |||| |||||||||||||||||| |||| ||||||||| |||| |||||||  ||||||||    
T  2453645 attattgcaattaaacctagaaatttaagtgtttaatgttccactatattgttttaaaaaa 2453705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 130 - 185
Target Start/End: Original strand, 29775735 - 29775790
Alignment:
Q  130 taagaattaatgcaattaaacctagaaacttaaatgtttaatgtccaatatattga 185  Q
    ||||||||||| |||||||||||| ||||| ||||||||||   ||||||||||||    
T  29775735 taagaattaattcaattaaacctaaaaactaaaatgtttaagacccaatatattga 29775790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 130 - 230
Target Start/End: Original strand, 31255759 - 31255860
Alignment:
Q  130 taagaattaatgcaattaaacctagaaacttaaatgtttaatgtccaatatattgaattaa--aaaaggatattatacaacatcatataaagttcacaca 227  Q
    |||| |||| || |||||||||||||||||| ||||||||| |||||||||||| ||| ||  ||||||  | ||||||||| | |||| |||||||| |    
T  31255759 taaggattagtgtaattaaacctagaaactt-aatgtttaaggtccaatatattaaatcaaagaaaaggtcaatatacaacaacgtatagagttcacata 31255857  T
Q  228 aaa 230  Q
    |||    
T  31255858 aaa 31255860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 164 - 221
Target Start/End: Original strand, 28288932 - 28288990
Alignment:
Q  164 tgtttaatgtccaatatattgaattaaaaaagga-tattatacaacatcatataaagtt 221  Q
    |||||||  ||||||||||||| |||||||||||  ||||||||| |||||||||||||    
T  28288932 tgtttaagatccaatatattgagttaaaaaaggaccattatacaatatcatataaagtt 28288990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 189 - 230
Target Start/End: Original strand, 28317722 - 28317763
Alignment:
Q  189 aaaaaaggatattatacaacatcatataaagttcacacaaaa 230  Q
    |||||||  |||||||||||||||||||||||||||| ||||    
T  28317722 aaaaaagcttattatacaacatcatataaagttcacaaaaaa 28317763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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