View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2184_high_11 (Length: 244)

Name: NF2184_high_11
Description: NF2184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2184_high_11
NF2184_high_11
[»] chr3 (7 HSPs)
chr3 (14-229)||(39561042-39561257)
chr3 (82-229)||(39568480-39568627)
chr3 (71-229)||(39581846-39582004)
chr3 (110-229)||(39571325-39571444)
chr3 (71-229)||(39585485-39585643)
chr3 (71-229)||(39565811-39565966)
chr3 (110-229)||(39575285-39575404)


Alignment Details
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 14 - 229
Target Start/End: Original strand, 39561042 - 39561257
Alignment:
Q  14 agaaaggaaactcaaattatatagaatcaatcaattgtatattataatggtaagttataattagttggtgttagtacatatatgcattgcacggtcttgc 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39561042 agaaaggaaactcaaattatatagaatcaatcaattgtatattataatggtaagttataattagttggtgttagtacatatatgcattgcacggtcttgc 39561141  T
Q  114 attaaaatcaaaaagcctccaaagctgcgccaagcacgaatatatcacaatcttcagcgctgcaccaagcgtgatgaccatggccattcttgcatccaca 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  39561142 attaaaatcaaaaagcctccaaagctgcgccaagcacgaatatatcacaatcttcagcgctgcaccaagcgtgatgatcatggccattcttgcatccaca 39561241  T
Q  214 ctcattccaattattc 229  Q
    ||||||||||||||||    
T  39561242 ctcattccaattattc 39561257  T

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Target: chr3; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 82 - 229
Target Start/End: Original strand, 39568480 - 39568627
Alignment:
Q  82 tgttagtacatatatgcattgcacggtcttgcattaaaatcaaaaagcctccaaagctgcgccaagcacgaatatatcacaatcttcagcgctgcaccaa 181  Q
    |||||||||||||||||||  ||  ||||||||| ||||| |||||||||| |||||||| |||||| | |||| |||||||||||| ||||||||||||    
T  39568480 tgttagtacatatatgcatcacatagtcttgcatcaaaattaaaaagcctctaaagctgcaccaagcgcaaataaatcacaatcttcggcgctgcaccaa 39568579  T
Q  182 gcgtgatgaccatggccattcttgcatccacactcattccaattattc 229  Q
    || | |||| |||| ||||| |||||||||||||||||||||||||||    
T  39568580 gcattatgatcatgaccatttttgcatccacactcattccaattattc 39568627  T

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Target: chr3; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 71 - 229
Target Start/End: Complemental strand, 39582004 - 39581846
Alignment:
Q  71 taattagttggtgttagtacatatatgcattgcacggtcttgcattaaaatcaaaaagcctccaaagctgcgccaagcacgaatatatcacaatcttcag 170  Q
    |||||||||| ||||||| ||||||| |||  ||   | |||||| ||||||||||||||||||||||||| |||||| | ||||||||||||||||| |    
T  39582004 taattagttgatgttagtgcatatatacatcacataattttgcatcaaaatcaaaaagcctccaaagctgcaccaagcgcaaatatatcacaatcttctg 39581905  T
Q  171 cgctgcaccaagcgtgatgaccatggccattcttgcatccacactcattccaattattc 229  Q
    ||| |||||||||  ||||  ||||||| || |||||||||||||||||||||||||||    
T  39581904 cgcagcaccaagcacgatggtcatggccgtttttgcatccacactcattccaattattc 39581846  T

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Target: chr3; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 110 - 229
Target Start/End: Original strand, 39571325 - 39571444
Alignment:
Q  110 ttgcattaaaatcaaaaagcctccaaagctgcgccaagcacgaatatatcacaatcttcagcgctgcaccaagcgtgatgaccatggccattcttgcatc 209  Q
    |||||| ||||||||||||||||||||||||| || |   | ||||||||||| |||||||| ||||||||||| |||||| |||| ||||| |||||||    
T  39571325 ttgcatcaaaatcaaaaagcctccaaagctgcaccgaatgcaaatatatcacattcttcagcactgcaccaagcttgatgatcatgaccatttttgcatc 39571424  T
Q  210 cacactcattccaattattc 229  Q
    ||||||||||||||||||||    
T  39571425 cacactcattccaattattc 39571444  T

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Target: chr3; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 71 - 229
Target Start/End: Complemental strand, 39585643 - 39585485
Alignment:
Q  71 taattagttggtgttagtacatatatgcattgcacggtcttgcattaaaatcaaaaagcctccaaagctgcgccaagcacgaatatatcacaatcttcag 170  Q
    |||||||||| ||||||| ||||||| |||  ||   | ||||||  |||||||||||||||||||||| | || |   | |||||||||||||||||||    
T  39585643 taattagttgatgttagtgcatatatacatcacataattttgcatccaaatcaaaaagcctccaaagctccacctaatgcaaatatatcacaatcttcag 39585544  T
Q  171 cgctgcaccaagcgtgatgaccatggccattcttgcatccacactcattccaattattc 229  Q
     | ||||||| || ||||||  ||| ||||| |||||||||||||||||||| ||||||    
T  39585543 tgttgcaccatgcttgatgattatgaccatttttgcatccacactcattccagttattc 39585485  T

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Target: chr3; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 71 - 229
Target Start/End: Original strand, 39565811 - 39565966
Alignment:
Q  71 taattagttggtgttagtacatatatgcattgcacggtcttgcattaaaatcaaaaagcctccaaagctgcgccaagcacgaatatatcacaatcttcag 170  Q
    |||||||||| ||||||| | ||||| | | |||   |||||||| ||||  ||||||||||||||||   ||||| | | ||||||||||| ||||| |    
T  39565811 taattagttgatgttagtgcctatatacgtagcataatcttgcatcaaaactaaaaagcctccaaagc---gccaaacgcaaatatatcacactcttctg 39565907  T
Q  171 cgctgcaccaagcgtgatgaccatggccattcttgcatccacactcattccaattattc 229  Q
    ||| |||||||||  ||||  ||||||| || |||||||||||||||||||||||||||    
T  39565908 cgcagcaccaagcacgatggtcatggccgtttttgcatccacactcattccaattattc 39565966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 110 - 229
Target Start/End: Complemental strand, 39575404 - 39575285
Alignment:
Q  110 ttgcattaaaatcaaaaagcctccaaagctgcgccaagcacgaatatatcacaatcttcagcgctgcaccaagcgtgatgaccatggccattcttgcatc 209  Q
    |||||| ||||||||||||||||||||||| | || |   | ||||||||||||||||||| | ||||||||||  ||||| |||| ||||| || ||||    
T  39575404 ttgcatcaaaatcaaaaagcctccaaagctccacctaatgcaaatatatcacaatcttcagtgttgcaccaagctcgatgatcatgaccatttttacatc 39575305  T
Q  210 cacactcattccaattattc 229  Q
    ||||||  ||||||||||||    
T  39575304 cacacttgttccaattattc 39575285  T

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