View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2184_high_2 (Length: 401)
Name: NF2184_high_2
Description: NF2184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2184_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 247; Significance: 1e-137; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 20 - 274
Target Start/End: Original strand, 21182172 - 21182426
Alignment:
| Q |
20 |
tcgccatgccaacatcatattggagagtatacggtccaggagcagggtcttctgcagttgtccatgatctcaaagacaaagtgtaccctgtgttaatatc |
119 |
Q |
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| T |
21182172 |
tcgccatgccaacatcatattggagagtatacggtccaggagcagggtcttctgcagttgtccatgatctcaaagacaaagtgtaccctgtgttaatatc |
21182271 |
T |
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| Q |
120 |
gtgtccgatgttcattccaggtaaaagggtatccgtggggtgattaaaactctgccataaaatcgctttgttagaggcgttcaatagtaccaagtttcct |
219 |
Q |
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| T |
21182272 |
gtgtccgatgttcattccaggtaaaagggtatccgtggggtgattaaaactctgccataaaatctgtttgttagaggcgttcaatagtaccaagtttcct |
21182371 |
T |
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| Q |
220 |
gagtccaagagcgttgcataggtattatagttgttgtttggaacgttggtcacga |
274 |
Q |
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| T |
21182372 |
gagtccaagagcgttgcataggtattatagttgttgtttggaacgttggtcacga |
21182426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 80 - 393
Target Start/End: Complemental strand, 23177729 - 23177401
Alignment:
| Q |
80 |
tccatgatctcaaagacaaagtgtaccctgtgttaatatcgtgtccgatgttcattccaggtaaaagggtatccgtggggtgattaaaactctgccataa |
179 |
Q |
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| T |
23177729 |
tccatgatctcaatgaccaagtgtgtcctgtgtcagtatcgtagcctatgttcattccaggcaaaagggtatctgtggggtgatcaaaactctgccataa |
23177630 |
T |
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| Q |
180 |
aatcgctttgttagaggcgttcaatagtaccaagtttcctgagtccaagagcgttgcataggt---------------attatagttgttgtttggaacg |
264 |
Q |
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| T |
23177629 |
aattgcttggttagaattattcaccagtaccaagtttcctgtgtccaagagggttgcgtaggtactattcctaatgctattgttgctgctgtttggagca |
23177530 |
T |
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| Q |
265 |
ttggtcacgaggtacgtcatttgtccatctatgatcacaatattaccatcaggatgaatggtaagtaacgccgaggatgtttgaaatgcgtaatctctgt |
364 |
Q |
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| T |
23177529 |
ccagtcacgtaggacatcatatctccatctatgattacaatattaccatcatggtcaatggtaagaaacaccgaggatgtttgaaatgcgttgtctctgt |
23177430 |
T |
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| Q |
365 |
tggcaacccaaataatcttgtcctttgct |
393 |
Q |
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| T |
23177429 |
tggcaacccaaacaatcttgtcatttgct |
23177401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 80 - 393
Target Start/End: Complemental strand, 23186858 - 23186539
Alignment:
| Q |
80 |
tccatgatctcaaagacaaagtgtaccctgtgttaatatcgtgtccgatgttcattccaggtaaaagggtatccgtggggtgattaaaactctgccataa |
179 |
Q |
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||||||||||||| ||| |||| ||||||| | |||||||||| | | |||||||||||||||||||||| ||||||| || ||| ||||||||||| |
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| T |
23186858 |
tccatgatctcaatgaccaagtacgtcctgtgtaagtatcgtgtcctaaggtcattccaggtaaaagggtatcggtggggttatcaaagctctgccataa |
23186759 |
T |
|
| Q |
180 |
aatcgctttgttagaggcgttcaatagtaccaagtttcctgagtccaagagcgttgcataggtatta------tagttgttgtttggaacgttggtcacg |
273 |
Q |
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||| ||| |||||| |||| |||||||||||||||| |||||| || ||||| |||||| || | |||||| ||||| | |||||| |
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| T |
23186758 |
aattacttggttagacttattcaccagtaccaagtttcctgtgtccaacagggttgcgtaggtactaatacgattgttgttacttggagcaccagtcacg |
23186659 |
T |
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| Q |
274 |
aggtacgtcatttgtccatctatgatcacaatattaccatcaggatgaatggtaagtaacgccgaggatgtttgaaatgcgtaatctctgttggcaaccc |
373 |
Q |
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| T |
23186658 |
tagcggatcatacctccatctatgatgacaatgttaccatcatcgtgaatggtaagaaacgccgaggatgtttgaggttcgtaatctctgttggcaaccc |
23186559 |
T |
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| Q |
374 |
aaataatcttgtcctttgct |
393 |
Q |
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| T |
23186558 |
aaacaatcttgtcatttgct |
23186539 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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