View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2184_high_5 (Length: 271)
Name: NF2184_high_5
Description: NF2184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2184_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 144; Significance: 9e-76; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 112 - 255
Target Start/End: Complemental strand, 21175372 - 21175229
Alignment:
| Q |
112 |
tctctcaaagtcaatctcttatgaatctttttacaccaacataccctttaccccattatatcatcaaatttgatcctctacattcagctttatggtgcac |
211 |
Q |
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| T |
21175372 |
tctctcaaagtcaatctcttatgaatctttttacaccaacataccctttaccccattatatcatcaaatttgatcctctacattcagctttatggtgcac |
21175273 |
T |
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| Q |
212 |
cttcacttttctctgatttaataatcaaagtagtacataccaat |
255 |
Q |
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| T |
21175272 |
cttcacttttctctgatttaataatcaaagtagtacataccaat |
21175229 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 9 - 47
Target Start/End: Complemental strand, 21175475 - 21175437
Alignment:
| Q |
9 |
atcatcactaccaagtaccaagaagatatgcacaaaata |
47 |
Q |
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| T |
21175475 |
atcatcactaccaagtaccaagaagatatgcacaaaata |
21175437 |
T |
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