View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2184_high_7 (Length: 269)
Name: NF2184_high_7
Description: NF2184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2184_high_7 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 237; Significance: 1e-131; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 269
Target Start/End: Complemental strand, 31385331 - 31385063
Alignment:
| Q |
1 |
actcaaacaagaacatctcttttcacaccattcatagctataattctcccagttattatagcctcatcggttctctactggctcgaaccattggaaccgg |
100 |
Q |
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| T |
31385331 |
actcaaacaagagcatctcttttcacaccgttcatagctataattctcccagttattatagcctcagcggttctctaccggctcgacccattggaaccgg |
31385232 |
T |
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| Q |
101 |
ttcattttcccctcgacaagctaaaccggtccgctataaccgttcctttacttaacaagaacatgcgattaggatctgaaaaagttgcagagggacaagt |
200 |
Q |
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| T |
31385231 |
ttcattttcccctcgacaagataaaccggtccgctataaccgttcctttacttaacaagaacatgcgattaggatctgaaaaagctgcagagggacaagt |
31385132 |
T |
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| Q |
201 |
tcttggacctgaagatttggtatacgatgctactttgggtgtagtttatactggttgtgaagatgggtg |
269 |
Q |
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| T |
31385131 |
tcttggacctgaagatttggtatacgatgctgctttgggtgtagtttatactggttgtgaagatgggtg |
31385063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 1 - 269
Target Start/End: Complemental strand, 31405844 - 31405576
Alignment:
| Q |
1 |
actcaaacaagaacatctcttttcacaccattcatagctataattctcccagttattatagcctcatcggttctctactggctcgaaccattggaaccgg |
100 |
Q |
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||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| ||||| ||||| ||||||| || || ||||||| |
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| T |
31405844 |
actcaaacaagaacatctcttttcacaccgttcatagctattattctcccagttattatagcctcagcggttttctaccggctcgaccctttcgaaccgg |
31405745 |
T |
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| Q |
101 |
ttcattttcccctcgacaagctaaaccggtccgctataaccgttcctttacttaacaagaacatgcgattaggatctgaaaaagttgcagagggacaagt |
200 |
Q |
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| T |
31405744 |
ttgttttccctcttgagaaacaaacccggtccactataaccgctcctttacgtaacaacaacatgagattaggatctgaaaacgttgcagacggagaact |
31405645 |
T |
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| Q |
201 |
tcttggacctgaagatttggtatacgatgctactttgggtgtagtttatactggttgtgaagatgggtg |
269 |
Q |
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| T |
31405644 |
ttttggacctgaagatttggtatacgacgctgacaagggtttgatgtatactggttgtgaagatgggtg |
31405576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 1 - 269
Target Start/End: Complemental strand, 31370711 - 31370443
Alignment:
| Q |
1 |
actcaaacaagaacatctcttttcacaccattcatagctataattctcccagttattatagcctcatcggttctctactggctcgaaccattggaaccgg |
100 |
Q |
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|||||| |||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||| || || ||||||| || || ||||||| |
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| T |
31370711 |
actcaaccaagaacatctcttttcacaccgttcatagctattattctcccagttattatagcctcggcggttttcaaccggctcgaccctttcgaaccgg |
31370612 |
T |
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| Q |
101 |
ttcattttcccctcgacaagctaaaccggtccgctataaccgttcctttacttaacaagaacatgcgattaggatctgaaaaagttgcagagggacaagt |
200 |
Q |
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| T |
31370611 |
ttgttttccctcttgagaaacaaacccggtccactataaccgctcctttacgtaacaacaacatgagattaggatctgaaaacgttgcagacggagaact |
31370512 |
T |
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| Q |
201 |
tcttggacctgaagatttggtatacgatgctactttgggtgtagtttatactggttgtgaagatgggtg |
269 |
Q |
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| T |
31370511 |
ttttggacctgaagatttggtatacgacgctgacaagggtttgatgtatactggttgtgaagatgggtg |
31370443 |
T |
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