View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2184_low_10 (Length: 248)
Name: NF2184_low_10
Description: NF2184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2184_low_10 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 128; Significance: 3e-66; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 8577540 - 8577318
Alignment:
| Q |
1 |
catctttttcttcaatccatataatatgattcctttcataacctcaccattaacattaacattaacatgttcatctcctttaatcctctcaacatccttt |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |||||||||||||| |||| |
|
|
| T |
8577540 |
catcattttcttcaatccatataatatgattcctttcataacctcaccattaacattaacat------gtgcatctccttcaatcctctcaacatacttt |
8577447 |
T |
|
| Q |
101 |
ttgtttggtgaataattctctcag--cctctaaccatcacatttttgtgtttcctcaaacnnnnnnnnnnnntacacttttcacgtttctgcataccatt |
198 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |
|
|
| T |
8577446 |
ttgtttggtgaataattctctcagtctctctaaccatcacatttttgtgtttcctcaaac--ctctctctcttacactcttcacgtttctgcataccatt |
8577349 |
T |
|
| Q |
199 |
attttcttattttgcttagggttttatggta |
229 |
Q |
| |
|
||||||||||||||||||||||||| ||||| |
|
|
| T |
8577348 |
attttcttattttgcttagggttttttggta |
8577318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 104 - 223
Target Start/End: Original strand, 8597490 - 8597607
Alignment:
| Q |
104 |
tttggtgaataattctctcagcctctaaccatcacatttttgtgtttcctcaaacnnnnnnnnnnnntacacttttcacgtttctgcataccattatttt |
203 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
8597490 |
tttggtgaataattctctcagtctctaaccatcacatttttgtgtttcctcaaacctctctctct--tacacttttcacgtttctgcataccattatttt |
8597587 |
T |
|
| Q |
204 |
cttattttgcttagggtttt |
223 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
8597588 |
cttattttgcttagggtttt |
8597607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University