View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2184_low_4 (Length: 328)
Name: NF2184_low_4
Description: NF2184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2184_low_4 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 15 - 328
Target Start/End: Complemental strand, 38090603 - 38090290
Alignment:
| Q |
15 |
agaatcaattcataccgtccatgtcttgattctagctccattttccgttccagtgaagatgctgtgtgacacatgcacctcttctacagtagcatatttt |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38090603 |
agaatcaattcataccgtccatgtcttgattctagctccattttccgttccagtgaagatgctgtgtgacacatgcacctcttctacagtagcatatttt |
38090504 |
T |
|
| Q |
115 |
ccgtcttttccaaggcttccaacactatattatagtcaccaacacatcaaaaacaggatagactttcactataatgttgatggaatattaacaaaatgtc |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38090503 |
ccgtcttttccaaggcttccaacactatattatagtcaccaacacatcaaaaacatgttagactttcactataatgttgatggaatattaacaaaatgtc |
38090404 |
T |
|
| Q |
215 |
aaaattaaaccattatatcaacaacacaaacctgatgccatgaccaggtccacaattaatcgcagttatgttaatgaatttggaaccactgttaatggca |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38090403 |
aaaattaaaccattatatcaacaacacaaacctgatgccatgaccaggtccacaattaatcgcagttatgttaatgaatttggaaccactgttaatggca |
38090304 |
T |
|
| Q |
315 |
atgcaatcgtcgcc |
328 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
38090303 |
atgcaatcgtcgcc |
38090290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 17 - 144
Target Start/End: Complemental strand, 32730737 - 32730610
Alignment:
| Q |
17 |
aatcaattcataccgtccatgtcttgattctagctccattttccgttccagtgaagatgctgtgtgacacatgcacctcttctacagtagcatattttcc |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||| ||| | | ||| || ||| ||||||||| | ||||||||| || | ||| | || |
|
|
| T |
32730737 |
aatcaattcataccgtccatgtcttgattctagcaccatttgttgtttctctaaaggtgatgtttgacacatgtatctcttctaccgtggaataatcccc |
32730638 |
T |
|
| Q |
117 |
gtcttttccaaggcttccaacactatat |
144 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
32730637 |
atcttttccaaggcttccaacactatat |
32730610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 243 - 325
Target Start/End: Complemental strand, 32730522 - 32730440
Alignment:
| Q |
243 |
aacctgatgccatgaccaggtccacaattaatcgcagttatgttaatgaatttggaaccactgttaatggcaatgcaatcgtc |
325 |
Q |
| |
|
||||| |||||||||||||||||||| | ||| ||||||||| ||||| | || |||| |||||||||||||||||||||| |
|
|
| T |
32730522 |
aaccttatgccatgaccaggtccacactgaatatcagttatgtagatgaactcggtaccattgttaatggcaatgcaatcgtc |
32730440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 325
Target Start/End: Original strand, 19056789 - 19056870
Alignment:
| Q |
244 |
acctgatgccatgaccaggtccacaattaatcgcagttatgttaatgaatttggaaccactgttaatggcaatgcaatcgtc |
325 |
Q |
| |
|
||||||||||||| |||||||||||| || ||||||||||||| || ||||| ||| |||||| || ||||||||||| |
|
|
| T |
19056789 |
acctgatgccatggccaggtccacaaagaacaccagttatgttaataaaattggagccagagttaattgcgatgcaatcgtc |
19056870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University