View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2184_low_6 (Length: 271)

Name: NF2184_low_6
Description: NF2184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2184_low_6
NF2184_low_6
[»] chr7 (3 HSPs)
chr7 (17-233)||(5646275-5646491)
chr7 (154-196)||(40726631-40726673)
chr7 (155-196)||(32584514-32584555)
[»] chr5 (2 HSPs)
chr5 (154-201)||(15292176-15292223)
chr5 (155-199)||(43349971-43350015)
[»] chr6 (1 HSPs)
chr6 (154-195)||(29338230-29338271)
[»] chr4 (1 HSPs)
chr4 (152-204)||(23233263-23233315)
[»] chr2 (2 HSPs)
chr2 (154-202)||(29807983-29808031)
chr2 (155-196)||(18745106-18745147)
[»] chr1 (1 HSPs)
chr1 (153-204)||(2898608-2898659)
[»] chr3 (3 HSPs)
chr3 (154-196)||(26276529-26276571)
chr3 (155-196)||(37133151-37133192)
chr3 (155-196)||(49017881-49017922)
[»] chr8 (2 HSPs)
chr8 (156-204)||(4073440-4073488)
chr8 (152-196)||(24320251-24320295)


Alignment Details
Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 17 - 233
Target Start/End: Complemental strand, 5646491 - 5646275
Alignment:
Q  17 tatataaagacactacattgtttaggataatcaacattaaaacatgttctaagatgtactttgagaatcattaaaggtctttattttgatatagaattgt 116  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5646491 tatataaagacactatattgtttaggataatcaacattaaaacatgttctaagatgtactttgagaatcattaaaggtctttattttgatatagaattgt 5646392  T
Q  117 gattaattaatcaaaattgatcaatgtgatattatttcatgaatgttgtgtttataaggattgattttactatccaaaaaagcttagccagtcaaattat 216  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||| ||||| |||||||||||    
T  5646391 gattaattaatcaagattgatcaatgtgatattatttcatgaatgttgtgtttataaggattgattttaaaatccaaaaaagtttagcgagtcaaattat 5646292  T
Q  217 tgtttatttgtcttcca 233  Q
    ||||| |||||||||||    
T  5646291 tgtttgtttgtcttcca 5646275  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 196
Target Start/End: Original strand, 40726631 - 40726673
Alignment:
Q  154 catgaatgttgtgtttataaggattgattttactatccaaaaa 196  Q
    |||||||||||||||||| |||||||||||| | |||||||||    
T  40726631 catgaatgttgtgtttatgaggattgattttgccatccaaaaa 40726673  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 155 - 196
Target Start/End: Complemental strand, 32584555 - 32584514
Alignment:
Q  155 atgaatgttgtgtttataaggattgattttactatccaaaaa 196  Q
    |||||||||||||||| || |||||||||||| |||||||||    
T  32584555 atgaatgttgtgtttacaaagattgattttaccatccaaaaa 32584514  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 201
Target Start/End: Original strand, 15292176 - 15292223
Alignment:
Q  154 catgaatgttgtgtttataaggattgattttactatccaaaaaagctt 201  Q
    |||||||||||||||||| |||||||||||| | ||||||||||||||    
T  15292176 catgaatgttgtgtttatgaggattgattttgccatccaaaaaagctt 15292223  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 199
Target Start/End: Complemental strand, 43350015 - 43349971
Alignment:
Q  155 atgaatgttgtgtttataaggattgattttactatccaaaaaagc 199  Q
    |||||||||||||||| || |||||||||| ||||| ||||||||    
T  43350015 atgaatgttgtgtttacaatgattgattttgctatctaaaaaagc 43349971  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 154 - 195
Target Start/End: Original strand, 29338230 - 29338271
Alignment:
Q  154 catgaatgttgtgtttataaggattgattttactatccaaaa 195  Q
    ||||||||||||||||| ||||||||||||| ||||||||||    
T  29338230 catgaatgttgtgtttacaaggattgatttttctatccaaaa 29338271  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 204
Target Start/End: Original strand, 23233263 - 23233315
Alignment:
Q  152 ttcatgaatgttgtgtttataaggattgattttactatccaaaaaagcttagc 204  Q
    |||||||||||||| ||||| |||||||||||  ||||||||||| |||||||    
T  23233263 ttcatgaatgttgtctttatgaggattgatttggctatccaaaaaggcttagc 23233315  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 202
Target Start/End: Complemental strand, 29808031 - 29807983
Alignment:
Q  154 catgaatgttgtgtttataaggattgattttactatccaaaaaagctta 202  Q
    ||||||||| || |||| |||||||||||||||||||||||||| ||||    
T  29808031 catgaatgtcgtatttacaaggattgattttactatccaaaaaatctta 29807983  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 155 - 196
Target Start/End: Original strand, 18745106 - 18745147
Alignment:
Q  155 atgaatgttgtgtttataaggattgattttactatccaaaaa 196  Q
    ||||||||||||||||||||||||| |||| | |||||||||    
T  18745106 atgaatgttgtgtttataaggattggttttgccatccaaaaa 18745147  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 153 - 204
Target Start/End: Complemental strand, 2898659 - 2898608
Alignment:
Q  153 tcatgaatgttgtgtttataaggattgattttactatccaaaaaagcttagc 204  Q
    ||||||||||||||||||  |||||||||||| | ||||||||| |||||||    
T  2898659 tcatgaatgttgtgtttaagaggattgattttgccatccaaaaaggcttagc 2898608  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 196
Target Start/End: Complemental strand, 26276571 - 26276529
Alignment:
Q  154 catgaatgttgtgtttataaggattgattttactatccaaaaa 196  Q
    |||||||||||||||||| |||||||||||| | |||||||||    
T  26276571 catgaatgttgtgtttatgaggattgattttgccatccaaaaa 26276529  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 155 - 196
Target Start/End: Original strand, 37133151 - 37133192
Alignment:
Q  155 atgaatgttgtgtttataaggattgattttactatccaaaaa 196  Q
    ||||||||||||||||||||||||| |||| | |||||||||    
T  37133151 atgaatgttgtgtttataaggattggttttgcgatccaaaaa 37133192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 155 - 196
Target Start/End: Complemental strand, 49017922 - 49017881
Alignment:
Q  155 atgaatgttgtgtttataaggattgattttactatccaaaaa 196  Q
    ||||||||||||||||| |||||||||||| | |||||||||    
T  49017922 atgaatgttgtgtttatgaggattgattttgccatccaaaaa 49017881  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 156 - 204
Target Start/End: Complemental strand, 4073488 - 4073440
Alignment:
Q  156 tgaatgttgtgtttataaggattgattttactatccaaaaaagcttagc 204  Q
    |||||||||||||||  || ||||||||||  |||||||||||||||||    
T  4073488 tgaatgttgtgtttacgagaattgattttatcatccaaaaaagcttagc 4073440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 152 - 196
Target Start/End: Complemental strand, 24320295 - 24320251
Alignment:
Q  152 ttcatgaatgttgtgtttataaggattgattttactatccaaaaa 196  Q
    |||||||||||||||||||  ||||||||||||  ||||||||||    
T  24320295 ttcatgaatgttgtgtttacgaggattgattttgatatccaaaaa 24320251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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