View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2185_low_1 (Length: 396)
Name: NF2185_low_1
Description: NF2185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2185_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 367; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 1 - 379
Target Start/End: Complemental strand, 51976786 - 51976408
Alignment:
| Q |
1 |
ttcaacggcaatgtcattgatcaaattaataggcgaagacacaatcctttcgataacattacgaaaaccaactttttccaaccaaagccacatagcaagc |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
51976786 |
ttcaacggcaatgtcattgatcaaattaataggcgaagacacaatccttacgataacattacgaaaaccaactttttccaaccacagccacatagcaagc |
51976687 |
T |
|
| Q |
101 |
aatcgcatggagtcggagggatcacgagaaagattagtgacaaggattttgtaaagttctctgtccatttggtggaacagaagaatatcgtctcagagaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51976686 |
aatcgcatggagtcggagggatcacgagaaagattagtgacaaggattttgtacagttctctgtccatttggtggaacagaagaatatcgtctcagagaa |
51976587 |
T |
|
| Q |
201 |
acagtgaaagaaagtggagaatccgttgaaggaaacatgaaacaatgctatgttcaattcgggaaagttggtaatgtataaatagtagtgaagagtcaca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51976586 |
acagtgaaagaaagtggagaatccgttgaaggaaacatgaaacaatgctatgttcaattcgggaaagttggtaatgtataaatagtagtgaagagtcaca |
51976487 |
T |
|
| Q |
301 |
actattggtgatatgagacatgttcacgcatcaagagacgtgttttttgagtgagttcgtaaatgggttataacatttc |
379 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51976486 |
actattggtgatatgagacatgttcacgcatcaagagacgtgttttttgagtgagttcgtaaatgggttataacatttc |
51976408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 9 - 292
Target Start/End: Complemental strand, 51972354 - 51972072
Alignment:
| Q |
9 |
caatgtcattgatcaaattaataggcgaagacacaatcctttcgataacattacgaaaaccaactttttccaaccaaagccacatagcaagcaatcgcat |
108 |
Q |
| |
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|||| |||||||||||| | |||||| |||||| ||| ||| | ||| ||| |||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
51972354 |
caatttcattgatcaaaatgataggcaaagacataatgtttttcacaacgttaggaaaaccaactttttccagccaaagccacatagcaagcaatcgcat |
51972255 |
T |
|
| Q |
109 |
ggagtcggagggatcacgagaaagattagtgacaaggattttgtaaagttctctgtccatttggtggaacagaagaatatcgtctcagagaaacagtgaa |
208 |
Q |
| |
|
||| || || |||||||||||||| || ||||||||||||||||| || |||||||||||||| ||||||| ||||| ||| ||| ||| ||| ||| | |
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| T |
51972254 |
ggactcagatggatcacgagaaaggttggtgacaaggattttgtagaggtctctgtccatttgatggaacataagaaaatcctct-tgaggaacggtgga |
51972156 |
T |
|
| Q |
209 |
agaaagtggagaatccgttgaaggaaacatgaaacaatgctatgttcaattcgggaaagttggtaatgtataaatagtagtgaa |
292 |
Q |
| |
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| T |
51972155 |
agaaagtggaggatccatggaaggaaacatgaaacaatgttatgtttgatttgggaaacttggtaatgtttaaatagtagtgaa |
51972072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 133; Significance: 5e-69; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 8 - 292
Target Start/End: Original strand, 17726749 - 17727032
Alignment:
| Q |
8 |
gcaatgtcattgatcaaattaataggcgaagacacaatcctttcgataacattacgaaaaccaactttttccaaccaaagccacatagcaagcaatcgca |
107 |
Q |
| |
|
||||| |||||||||||| |||||||| |||||| ||| ||| | ||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17726749 |
gcaatctcattgatcaaaataataggcaaagacataatatttttcacaacgttatgaaaaccaactttttccaaccaaagccacatagcaagcaatcgca |
17726848 |
T |
|
| Q |
108 |
tggagtcggagggatcacgagaaagattagtgacaaggattttgtaaagttctctgtccatttggtggaacagaagaatatcgtctcagagaaacagtga |
207 |
Q |
| |
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|||| ||||| |||||||||||||| | ||||||||||||||||| || ||||| |||| ||||||||||||||||| ||| ||| ||| ||| |||| |
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| T |
17726849 |
tggactcggatggatcacgagaaagttctgtgacaaggattttgtagaggtctctatccacttggtggaacagaagaaaatcctct-tgaggaacggtga |
17726947 |
T |
|
| Q |
208 |
aagaaagtggagaatccgttgaaggaaacatgaaacaatgctatgttcaattcgggaaagttggtaatgtataaatagtagtgaa |
292 |
Q |
| |
|
|||||||||||| |||| | |||||||| ||||||||||||||||||||||| || ||| ||| ||| || ||||||||| |||| |
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| T |
17726948 |
aagaaagtggaggatccatggaaggaaaaatgaaacaatgctatgttcaatttggaaaacttgataacgtttaaatagtaatgaa |
17727032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 8 - 287
Target Start/End: Original strand, 17711865 - 17712143
Alignment:
| Q |
8 |
gcaatgtcattgatcaaattaataggcgaagacacaatcctttcgataacattacgaaaaccaactttttccaaccaaagccacatagcaagcaatcgca |
107 |
Q |
| |
|
||||| |||||||||||| |||| ||| |||||| ||| ||| | ||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17711865 |
gcaatttcattgatcaaaataattggcaaagacataatatttttcacaacgttatgaaaaccaactttttccaaccaaagccacatagcaagcaatcgca |
17711964 |
T |
|
| Q |
108 |
tggagtcggagggatcacgagaaagattagtgacaaggattttgtaaagttctctgtccatttggtggaacagaagaatatcgtctcagagaaacagtga |
207 |
Q |
| |
|
|||| ||||| |||||||||||||| | ||||||||||||||||| || ||||||||||||||||||| ||| |||| ||| ||| ||| || |||| |
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| T |
17711965 |
tggactcggatggatcacgagaaaggtctgtgacaaggattttgtagaggtctctgtccatttggtggatcaggagaaaatcctct-tgaggaatggtga |
17712063 |
T |
|
| Q |
208 |
aagaaagtggagaatccgttgaaggaaacatgaaacaatgctatgttcaattcgggaaagttggtaatgtataaatagta |
287 |
Q |
| |
|
|||||||||||| |||| | |||||||| |||||| |||| ||||||||||| | |||| | ||||||| ||||||||| |
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|
| T |
17712064 |
aagaaagtggaggatccatggaaggaaatatgaaataatgttatgttcaatttgagaaactgtgtaatgtttaaatagta |
17712143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 9 - 252
Target Start/End: Original strand, 40784257 - 40784499
Alignment:
| Q |
9 |
caatgtcattgatcaaattaataggcgaagacacaatcctttcgataacattacgaaaaccaactttttccaaccaaagccacatagcaagcaatcgcat |
108 |
Q |
| |
|
|||| |||| ||||||| ||| |||| ||||||||||| ||| | ||||| | ||||||||||| |||||| ||||||||||||||||||||| | |
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| T |
40784257 |
caatttcatcgatcaaaataacaggcaaagacacaatctttttcacaacatcatgaaaaccaactctttccagccaaagccacatagcaagcaactgtgc |
40784356 |
T |
|
| Q |
109 |
ggagtcggagggatcacgagaaagattagtgacaaggattttgtaaagttctctgtccatttggtggaacagaagaatatcgtctcagagaaacagtgaa |
208 |
Q |
| |
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|| | | |||||||||||||| || ||||||||||| ||||| || ||||||||| || |||||||||||||| ||| ||| | |||| |||||| |
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|
| T |
40784357 |
agacttatatggatcacgagaaaggttggtgacaaggatattgtagaggtctctgtccgatttgtggaacagaagaaaatcctct-tgggaaagagtgaa |
40784455 |
T |
|
| Q |
209 |
agaaagtggagaatccgttgaaggaaacatgaaacaatgctatg |
252 |
Q |
| |
|
|||||||| || |||| | |||| ||| ||||| |||| ||||| |
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|
| T |
40784456 |
agaaagtgaagtatccatggaagaaaatatgaagcaatactatg |
40784499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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