View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2185_low_3 (Length: 248)

Name: NF2185_low_3
Description: NF2185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2185_low_3
NF2185_low_3
[»] chr5 (5 HSPs)
chr5 (13-248)||(33807962-33808195)
chr5 (13-248)||(33811616-33811849)
chr5 (13-248)||(33816534-33816767)
chr5 (88-183)||(16698504-16698601)
chr5 (88-183)||(22763905-22764002)
[»] chr3 (9 HSPs)
chr3 (13-247)||(50603148-50603384)
chr3 (16-183)||(39298736-39298908)
chr3 (16-248)||(54967228-54967477)
chr3 (88-248)||(44782542-44782713)
chr3 (88-185)||(18556392-18556491)
chr3 (88-183)||(54979933-54980031)
chr3 (25-114)||(31725346-31725433)
chr3 (88-187)||(17645800-17645897)
chr3 (201-248)||(54979860-54979905)
[»] chr6 (6 HSPs)
chr6 (13-248)||(31151944-31152180)
chr6 (88-183)||(22981524-22981621)
chr6 (88-183)||(23806787-23806884)
chr6 (45-190)||(1111378-1111524)
chr6 (201-248)||(22981647-22981692)
chr6 (201-248)||(23806716-23806761)
[»] chr1 (2 HSPs)
chr1 (51-248)||(29706872-29707069)
chr1 (91-183)||(27642132-27642225)
[»] scaffold0045 (1 HSPs)
scaffold0045 (88-248)||(26516-26674)
[»] chr7 (12 HSPs)
chr7 (16-183)||(25857220-25857395)
chr7 (88-185)||(13465046-13465145)
chr7 (88-248)||(4842666-4842837)
chr7 (16-183)||(4835664-4835840)
chr7 (13-175)||(8252686-8252846)
chr7 (88-183)||(27341025-27341120)
chr7 (88-192)||(17845865-17845969)
chr7 (88-183)||(24379370-24379467)
chr7 (117-183)||(38994151-38994218)
chr7 (201-248)||(25857149-25857194)
chr7 (214-248)||(4835593-4835627)
chr7 (216-248)||(24380113-24380145)
[»] chr4 (3 HSPs)
chr4 (88-185)||(37286972-37287069)
chr4 (16-248)||(9757230-9757480)
chr4 (88-183)||(42682924-42683020)
[»] chr8 (4 HSPs)
chr8 (16-248)||(41481548-41481797)
chr8 (16-248)||(36167547-36167795)
chr8 (88-183)||(18951211-18951309)
chr8 (203-248)||(18951142-18951185)
[»] scaffold0479 (2 HSPs)
scaffold0479 (88-183)||(2747-2845)
scaffold0479 (201-248)||(2873-2918)
[»] chr2 (2 HSPs)
chr2 (88-181)||(37037942-37038035)
chr2 (214-248)||(37038074-37038108)
[»] scaffold0003 (2 HSPs)
scaffold0003 (88-183)||(342306-342404)
scaffold0003 (214-248)||(342235-342269)


Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 13 - 248
Target Start/End: Original strand, 33807962 - 33808195
Alignment:
Q  13 aatatagtgagccaatttgtgagagttgtatctacaaattgagatacatagttaggtccacctgaaggtgaagatttgtattcccattattattatagtg 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  33807962 aatatagtgagccaatttgtgagagttgtatctacaaattgagatacatagttaggtccacctgagggtgaagatttgtattcccattattattatagtg 33808061  T
Q  113 gagatttaagaggcttacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaattttgttgtgtgtcattttacgtttccgcta 212  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  33808062 gagatttaagaggcctacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaattttgt--tgtgtcattttacgtttccgcta 33808159  T
Q  213 aagtgcctattttgagttcacggaggagggaaatta 248  Q
    ||||||||||||||||||||||||||||||||||||    
T  33808160 aagtgcctattttgagttcacggaggagggaaatta 33808195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 13 - 248
Target Start/End: Original strand, 33811616 - 33811849
Alignment:
Q  13 aatatagtgagccaatttgtgagagttgtatctacaaattgagatacatagttaggtccacctgaaggtgaagatttgtattcccattattattatagtg 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  33811616 aatatagtgagccaatttgtgagagttgtatctacaaattgagatacatagttaggtccacctgagggtgaagatttgtattcccattattattatagtg 33811715  T
Q  113 gagatttaagaggcttacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaattttgttgtgtgtcattttacgtttccgcta 212  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  33811716 gagatttaagaggcctacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaattttgt--tgtgtcattttacgtttccgcta 33811813  T
Q  213 aagtgcctattttgagttcacggaggagggaaatta 248  Q
    ||||||||||||||||||||||||||||||||||||    
T  33811814 aagtgcctattttgagttcacggaggagggaaatta 33811849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 13 - 248
Target Start/End: Original strand, 33816534 - 33816767
Alignment:
Q  13 aatatagtgagccaatttgtgagagttgtatctacaaattgagatacatagttaggtccacctgaaggtgaagatttgtattcccattattattatagtg 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  33816534 aatatagtgagccaatttgtgagagttgtatctacaaattgagatacatagttaggtccacctgagggtgaagatttgtattcccattattattatagtg 33816633  T
Q  113 gagatttaagaggcttacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaattttgttgtgtgtcattttacgtttccgcta 212  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  33816634 gagatttaagaggcctacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaattttgt--tgtgtcattttacgtttccgcta 33816731  T
Q  213 aagtgcctattttgagttcacggaggagggaaatta 248  Q
    ||||||||||||||||||||||||||||||||||||    
T  33816732 aagtgcctattttgagttcacggaggagggaaatta 33816767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 88 - 183
Target Start/End: Original strand, 16698504 - 16698601
Alignment:
Q  88 ttgtattcccattattattatagtgga-gatttaagaggcttacgggtcccgtggtttttcc-ttactcacattgagaaggttttccacgctaaaatt 183  Q
    ||||||||||||||| ||||||||||| | |||||||||   | ||||||| |  ||||||| || ||||||||||||||| ||||||| ||||||||    
T  16698504 ttgtattcccattatcattatagtggaagttttaagaggtccaagggtcccataatttttccctttctcacattgagaaggatttccacactaaaatt 16698601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 88 - 183
Target Start/End: Complemental strand, 22764002 - 22763905
Alignment:
Q  88 ttgtattcccattattattatagtgga-gatttaagaggcttacgggtcccgtggtttttcc-ttactcacattgagaaggttttccacgctaaaatt 183  Q
    ||||||||||||||| |||||||   | | ||||||||||  |  ||||||||||||||||| || |||| ||||||||||||||||| |||||||||    
T  22764002 ttgtattcccattatcattatagcataagttttaagaggcccaatggtcccgtggtttttccctttctcatattgagaaggttttccatgctaaaatt 22763905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 186; Significance: 1e-101; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 13 - 247
Target Start/End: Original strand, 50603148 - 50603384
Alignment:
Q  13 aatatagtgagccaatttgt--gagagttgtatctacaaattgagatacatagttaggtccacctgaaggtgaagatttgtattcccattattattatag 110  Q
    ||||||||||||||||||||  |||||||||||||||||||||||||| ||||||||||||| || ||||||||||||||||||||||||||||||||||    
T  50603148 aatatagtgagccaatttgtatgagagttgtatctacaaattgagatatatagttaggtccatctaaaggtgaagatttgtattcccattattattatag 50603247  T
Q  111 tggagatttaagaggcttacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaattttgttgtgtgtcattttacgtttccgc 210  Q
    |||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||    
T  50603248 tggagatttaagaggcctacgggttccgtggttttttcttactcacattgagaaggttttccacgctaaaattttattgtgtgtcattttacgttttcgc 50603347  T
Q  211 taaagtgcctattttgagttcacggaggagggaaatt 247  Q
    ||||||| |||||||||||||||||||||| ||||||    
T  50603348 taaagtgtctattttgagttcacggaggagagaaatt 50603384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 16 - 183
Target Start/End: Original strand, 39298736 - 39298908
Alignment:
Q  16 atagtgagccaatttgtgagagttgtatctacaaattgagatacata-----gttaggtccacctgaaggtgaagat-ttgtattcccattattattata 109  Q
    ||||||||||||||||||||||| ||   |||||||||||| | |||     ||||| ||||||| | ||||||| | |||||||||| |||| ||||||    
T  39298736 atagtgagccaatttgtgagagt-gtccttacaaattgagagatatattgtagttagatccacctaagggtgaagttgttgtattccctttatcattata 39298834  T
Q  110 gtggagatttaagaggcttacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaatt 183  Q
    |||||  ||||||||||  | |||||||||| |||||||||  |||||||||||||||||| ||| ||||||||    
T  39298835 gtggaagtttaagaggcacaagggtcccgtgatttttccttcatcacattgagaaggtttttcacactaaaatt 39298908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 16 - 248
Target Start/End: Complemental strand, 54967477 - 54967228
Alignment:
Q  16 atagtgagccaatttgtgagagttgtatctacaaattgagatacata-----gttaggtccacctgaaggtgaagat-ttgtattcccattattattata 109  Q
    |||||||||||||||||||||||  |   |||||||||||| | |||     || || ||||||| | ||||||| | ||||||||||||||| ||||||    
T  54967477 atagtgagccaatttgtgagagtgttccttacaaattgagagatatattgtagtgagatccacctaagggtgaagttgttgtattcccattatcattata 54967378  T
Q  110 gtggagattt--aagaggcttacgggtcccgtggtttttcc-ttactcacattgagaaggttttccacgctaaaattttgttgtgtgtc----------- 195  Q
    |||||  |||  |||||||  | |||||||||||||||||| || |||| ||||||||||||||||||||||||||| | || ||||||               
T  54967377 gtggaagtttttaagaggcccaagggtcccgtggtttttccctttctcatattgagaaggttttccacgctaaaattctctt-tgtgtcattacgctttt 54967279  T
Q  196 attttacgtttccgctaaagtgcctattttgagttcacggaggagggaaatta 248  Q
    |||| |||||||||||  ||||||||||||||||| |||||||||||||||||    
T  54967278 atttcacgtttccgct--agtgcctattttgagttgacggaggagggaaatta 54967228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 88 - 248
Target Start/End: Complemental strand, 44782713 - 44782542
Alignment:
Q  88 ttgtattcccattattattatagtgga-gatttaagaggcttacgggtcccgtggttttt--ccttactcacattgagaaggttttccacgctaaaattt 184  Q
    ||||||||||||||| ||||||||||| | |||||||||   | ||||||||||||||||  |||| |||| |||||||||||||||||||||||||||     
T  44782713 ttgtattcccattatcattatagtggaagttttaagaggtccaagggtcccgtggttttttccctttctcatattgagaaggttttccacgctaaaattc 44782614  T
Q  185 tgttgtgtgtc-----------attttacgtttccgctaaagtgcctattttgagttcacggaggagggaaatta 248  Q
    | || ||||||           |||| |||||||||||  |||| ||||||||||||||||||||||||||||||    
T  44782613 tctt-tgtgtcattacgtttatatttcacgtttccgct--agtgtctattttgagttcacggaggagggaaatta 44782542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 88 - 185
Target Start/End: Complemental strand, 18556491 - 18556392
Alignment:
Q  88 ttgtattcccattattattatagtggagatttaagaggcttacgggtcccgtggttttt--ccttactcacattgagaaggttttccacgctaaaatttt 185  Q
    |||||||| |||| | |||||||||||  |||||||||||   ||||||||||||||||  |||| |||| |||||||||||||||||||||||||||||    
T  18556491 ttgtattctcattgtcattatagtggaagtttaagaggctcgagggtcccgtggttttttgcctttctcagattgagaaggttttccacgctaaaatttt 18556392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 88 - 183
Target Start/End: Complemental strand, 54980031 - 54979933
Alignment:
Q  88 ttgtattcccattattattatagtggagattt--aagaggcttacgggtcccgtggtttttcc-ttactcacattgagaaggttttccacgctaaaatt 183  Q
    ||||||||||||||| |||||||||||  |||  |||||||  | |||||||||||||||||| || |||| ||||||||||||||||| |||||||||    
T  54980031 ttgtattcccattatcattatagtggaagtttttaagaggcccaagggtcccgtggtttttccctttctcatattgagaaggttttccatgctaaaatt 54979933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 25 - 114
Target Start/End: Complemental strand, 31725433 - 31725346
Alignment:
Q  25 caatttgtgagagttgtatctacaaattgagatacatagttaggtccacctgaaggtgaagatttgtattcccattattattatagtgga 114  Q
    |||||||||||| ||||  |||||||||||||||||| || |||||||||| |  |||||||||||||||| ||||||| ||||| ||||    
T  31725433 caatttgtgagaattgt--ctacaaattgagatacatcgtaaggtccacctaagtgtgaagatttgtattctcattattgttatattgga 31725346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 88 - 187
Target Start/End: Original strand, 17645800 - 17645897
Alignment:
Q  88 ttgtattcccattattattatagtggagatttaagaggcttacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaattttgt 187  Q
    |||||||  |||||| |||||||||||  ||||||| ||| | | ||||||||||||||  ||  | | |||||||||||||||||||||||||||||||    
T  17645800 ttgtattgtcattatcattatagtggaagtttaagacgctcaagagtcccgtggttttttttt--ttatattgagaaggttttccacgctaaaattttgt 17645897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 248
Target Start/End: Complemental strand, 54979905 - 54979860
Alignment:
Q  201 acgtttccgctaaagtgcctattttgagttcacggaggagggaaatta 248  Q
    ||||||||||||  |||| ||||||||||| |||||||||||||||||    
T  54979905 acgtttccgcta--gtgcttattttgagttgacggaggagggaaatta 54979860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 173; Significance: 4e-93; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 13 - 248
Target Start/End: Complemental strand, 31152180 - 31151944
Alignment:
Q  13 aatatagtgagccaatttgtgagagttgtatctacaaattgagatacatagttaggtccacctgaaggtgaagatttgtattcccattattattatagtg 112  Q
    |||||||| ||||||||||||||||||||||||| ||||| |||||| |||||||||||| |||| ||||||||||||||||||||||||||||||||||    
T  31152180 aatatagtaagccaatttgtgagagttgtatctataaatttagatacgtagttaggtccatctgagggtgaagatttgtattcccattattattatagtg 31152081  T
Q  113 gagatttaagaggcttacgggtcccgtggt-ttttccttactcacattgagaaggttttccacgctaaaattttgttgtgtgtcattttacgtttccgct 211  Q
    |||||||||||||| ||||| ||||||||| |||| |||||||||||||||||||||||||||  ||||||||||||||||||||||||| |||||||||    
T  31152080 gagatttaagaggcctacggatcccgtggtttttttcttactcacattgagaaggttttccacattaaaattttgttgtgtgtcattttatgtttccgct 31151981  T
Q  212 aaagtgcctattttgagttcacggaggagggaaatta 248  Q
    |||||||||||||||||||||  ||||||||||||||    
T  31151980 aaagtgcctattttgagttcagagaggagggaaatta 31151944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 88 - 183
Target Start/End: Original strand, 22981524 - 22981621
Alignment:
Q  88 ttgtattcccattattattatagtgga-gatttaagaggcttacgggtcccgtggtttttcc-ttactcacattgagaaggttttccacgctaaaatt 183  Q
    ||||||||||||||| ||||||||||| | ||||||||||  | |||||||||||||||||| || ||||||||||||||||||||||||||||||||    
T  22981524 ttgtattcccattatcattatagtggaagttttaagaggcccaagggtcccgtggtttttccctttctcacattgagaaggttttccacgctaaaatt 22981621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 88 - 183
Target Start/End: Complemental strand, 23806884 - 23806787
Alignment:
Q  88 ttgtattcccattattattatagtgga-gatttaagaggcttacgggtcccgtggtttttcc-ttactcacattgagaaggttttccacgctaaaatt 183  Q
    ||||||||||||||| ||||||||||| | ||||||||||  | |||||||||||||||||| || ||||||||||||||||||||||||||||||||    
T  23806884 ttgtattcccattatcattatagtggaagttttaagaggcccaagggtcccgtggtttttccctttctcacattgagaaggttttccacgctaaaatt 23806787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 45 - 190
Target Start/End: Complemental strand, 1111524 - 1111378
Alignment:
Q  45 tacaaattgagatacatagttaggtccacctgaaggtgaagatttgtattcccattattattatagtgg-agatttaagaggcttacgggtcccgtggtt 143  Q
    |||||||||||||||||||||||||  || | | ||||||  ||||||||| ||||||||||||  | | ||||||||||| |||| | ||||| || ||    
T  1111524 tacaaattgagatacatagttaggtttacgtaagggtgaaagtttgtattctcattattattattatagtagatttaagagacttatgagtcccatgatt 1111425  T
Q  144 tttccttactcacattgagaaggttttccacgctaaaattttgttgt 190  Q
    |||||||| | ||||| ||||||||||| || |||||||||||||||    
T  1111424 tttccttatttacattcagaaggttttctacactaaaattttgttgt 1111378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 248
Target Start/End: Original strand, 22981647 - 22981692
Alignment:
Q  201 acgtttccgctaaagtgcctattttgagttcacggaggagggaaatta 248  Q
    ||||||||||||  |||||| ||||||||||||||||| |||||||||    
T  22981647 acgtttccgcta--gtgcctgttttgagttcacggaggggggaaatta 22981692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 248
Target Start/End: Complemental strand, 23806761 - 23806716
Alignment:
Q  201 acgtttccgctaaagtgcctattttgagttcacggaggagggaaatta 248  Q
    ||||||||||||  |||||| ||||||||||||||||| |||||||||    
T  23806761 acgtttccgcta--gtgcctgttttgagttcacggaggggggaaatta 23806716  T

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Target: chr1 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 51 - 248
Target Start/End: Complemental strand, 29707069 - 29706872
Alignment:
Q  51 ttgagatacatagttaggtccacctgaaggtgaagatttgtattcccattattattatagtggagatttaagaggcttacgggtcccgtggtttttcctt 150  Q
    |||||||||||||||||||||||| || ||||||||||| |  | ||||||||||||||||||||||||||||||  || | |||||||| || ||||||    
T  29707069 ttgagatacatagttaggtccacccgagggtgaagattttttattccattattattatagtggagatttaagaggtctatgagtcccgtgattgttcctt 29706970  T
Q  151 actcacattgagaaggttttccacgctaaaattttgttgtgtgtcattttacgtttccgctaaagtgcctattttgagttcacggaggagggaaatta 248  Q
    ||||| |||||||||||||||| | ||||||||||||||||||||||||||| |||  |||||||||| |||||| |||||||||| ||| |||||||    
T  29706969 actcatattgagaaggttttcctcactaaaattttgttgtgtgtcattttacatttttgctaaagtgcatattttaagttcacggatgagagaaatta 29706872  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 91 - 183
Target Start/End: Original strand, 27642132 - 27642225
Alignment:
Q  91 tattcccattattattatagtggagatttaagaggcttacgggtcccgtggttttt-ccttactcacattgagaaggttttccacgctaaaatt 183  Q
    ||||||||||||||||||||||||  |||||||| |    ||  |||||| ||||| |||| ||||||||||||||||||| ||||| ||||||    
T  27642132 tattcccattattattatagtggaagtttaagagacccgaggaccccgtgattttttcctttctcacattgagaaggttttacacgccaaaatt 27642225  T

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Target: scaffold0045 (Bit Score: 82; Significance: 8e-39; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 88 - 248
Target Start/End: Complemental strand, 26674 - 26516
Alignment:
Q  88 ttgtattcccattattattatagtggagatttaagaggcttacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaattttgt 187  Q
    |||||||| | |||| |||| ||||||  ||||||||||  | ||||||||| ||||||||||||||||||||| |||||||||||| ||||||||||||    
T  26674 ttgtattctcgttatcattagagtggaagtttaagaggcccaagggtcccgtagtttttccttactcacattgaaaaggttttccaccctaaaattttgt 26575  T
Q  188 tgtgtgtcattttacgtttccgctaaagtgcctattttgagttcacggaggagggaaatta 248  Q
    |  |||| ||||||||||| |||||||||| |||||||||||||||| |||||||| ||||    
T  26574 t--gtgttattttacgttttcgctaaagtgtctattttgagttcacgaaggagggagatta 26516  T

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Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 16 - 183
Target Start/End: Complemental strand, 25857395 - 25857220
Alignment:
Q  16 atagtgagccaatttgtgagagttgtatctacaaatt--gagatacat---agttaggtccacctgaaggtgaagat-ttgtattcccattattattata 109  Q
    |||||||||||||||||||||||  |   ||||||||  |||||| ||   ||| || ||||||| ||||||||| | ||||||||||||||| ||||||    
T  25857395 atagtgagccaatttgtgagagtgttccttacaaattaagagatatattgtagtgagatccacctaaaggtgaagttgttgtattcccattatcattata 25857296  T
Q  110 gtgga-gatttaagaggcttacgggtcccgtggtttttcctta-ctcacattgagaaggttttccacgctaaaatt 183  Q
    ||||| | ||||||||||  | ||||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  25857295 gtggaagttttaagaggcccaagggtcccgtggtttttccttttctcacattgagaaggttttccacgctaaaatt 25857220  T

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Target: chr7; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 88 - 185
Target Start/End: Complemental strand, 13465145 - 13465046
Alignment:
Q  88 ttgtattcccattattattatagtgga-gatttaagaggcttacgggtcccgtggtttttcc-ttactcacattgagaaggttttccacgctaaaatttt 185  Q
    ||||||||||||||| ||||||||||| | ||||||||||  | |||||| ||||||||||| || ||||||||||||||||||||||||||||||||||    
T  13465145 ttgtattcccattatcattatagtggatgttttaagaggcccaagggtcctgtggtttttccctttctcacattgagaaggttttccacgctaaaatttt 13465046  T

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Target: chr7; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 88 - 248
Target Start/End: Complemental strand, 4842837 - 4842666
Alignment:
Q  88 ttgtattcccattattattatagtgga-gatttaagaggcttacgggtcccgtggttttt--ccttactcacattgagaaggttttccacgctaaaattt 184  Q
    ||||||||| ||||| ||||||||||| | ||||||||||  | |||||| |||||||||  |||| ||||||||||||||||||||||||||||||||     
T  4842837 ttgtattcctattatcattatagtggaagttttaagaggcccaagggtcctgtggttttttccctttctcacattgagaaggttttccacgctaaaattc 4842738  T
Q  185 tgttgtgtgtc-----------attttacgtttccgctaaagtgcctattttgagttcacggaggagggaaatta 248  Q
    | || ||||||           |||| |||||||||||  |||||||||||||||||||||||||||||||||||    
T  4842737 tctt-tgtgtcattacacttatatttcacgtttccgct--agtgcctattttgagttcacggaggagggaaatta 4842666  T

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Target: chr7; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 16 - 183
Target Start/End: Complemental strand, 4835840 - 4835664
Alignment:
Q  16 atagtgagccaatttgtgagagttgtatctacaaattgagatacata-----gttaggtccacctgaaggtgaagat-ttgtattcccattattattata 109  Q
    |||||||||||||||||||||||  |   |||||||||||| | |||     || || ||||||| | ||||||| | ||| ||||||||||| ||||||    
T  4835840 atagtgagccaatttgtgagagtgttccttacaaattgagagatatattgtagtgagatccacctaagggtgaagttgttgcattcccattatcattata 4835741  T
Q  110 gtgga-gatttaagaggcttacgggtcccgtggttttt--ccttactcacattgagaaggttttccacgctaaaatt 183  Q
    ||||| | ||||||||||  | ||||||||||||||||  |||| ||||||||||||||||||||||||||||||||    
T  4835740 gtggaagttttaagaggcccaagggtcccgtggttttttccctttctcacattgagaaggttttccacgctaaaatt 4835664  T

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Target: chr7; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 13 - 175
Target Start/End: Complemental strand, 8252846 - 8252686
Alignment:
Q  13 aatatagtgagccaatttgtgagagttgtatctacaaattgagatacatagttag----gtccacctgaaggtgaagatttgtattcccattattattat 108  Q
    ||||||||||| |||||| ||| ||||||||||||||||||||||||||| |||     ||||| || ||| ||||| ||||||||||| |||||||||     
T  8252846 aatatagtgagtcaatttatgatagttgtatctacaaattgagatacataattaattaagtccatctaaagatgaagctttgtattcccgttattattac 8252747  T
Q  109 agtggagatttaagaggcttacgggtcccgtggtttttccttactcacattgagaaggttttccacg 175  Q
    | ||  || ||||||| |||||| ||||||      | |||||||||| ||||||||||||||||||    
T  8252746 attgaggagttaagagacttacgagtcccg------taccttactcacgttgagaaggttttccacg 8252686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 88 - 183
Target Start/End: Complemental strand, 27341120 - 27341025
Alignment:
Q  88 ttgtattcccattattattatagtggagatttaagaggcttacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaatt 183  Q
    ||||||| ||||||| ||| |||| ||  |||||||||   | |||||||||||||||||||| || |||||||||||||||||||||||||||||    
T  27341120 ttgtatttccattatcattgtagtagaagtttaagaggtacaagggtcccgtggtttttcctttcttacattgagaaggttttccacgctaaaatt 27341025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 88 - 192
Target Start/End: Original strand, 17845865 - 17845969
Alignment:
Q  88 ttgtattcccattattattatagtggagatttaagaggcttacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaattttgt 187  Q
    ||||||| ||||||| |||||||||||  |||||||||   |  ||||| ||||||||||||| ||||||||| ||||||||||||| |||||||| | |    
T  17845865 ttgtatttccattatcattatagtggaagtttaagaggtccaaaggtcctgtggtttttccttcctcacattgggaaggttttccactctaaaattctct 17845964  T
Q  188 tgtgt 192  Q
    |||||    
T  17845965 tgtgt 17845969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 88 - 183
Target Start/End: Complemental strand, 24379467 - 24379370
Alignment:
Q  88 ttgtattcccattattattatagtgga-gatttaagaggcttacgggtcccgtggtttttcc-ttactcacattgagaaggttttccacgctaaaatt 183  Q
    ||||||||| ||||| ||||||||||| | ||||||||||  |  | ||||||||||||||| || |||||||||||||||||||||||| |||||||    
T  24379467 ttgtattcctattatcattatagtggaagttttaagaggcccaaagatcccgtggtttttccctttctcacattgagaaggttttccacgttaaaatt 24379370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 117 - 183
Target Start/End: Complemental strand, 38994218 - 38994151
Alignment:
Q  117 tttaagaggcttacgggtcccgtggtttttcc-ttactcacattgagaaggttttccacgctaaaatt 183  Q
    |||||||||||   |||||||||||||||||| || ||| |||||||||||||||||||| |||||||    
T  38994218 tttaagaggctcgagggtcccgtggtttttccctttctcgcattgagaaggttttccacgttaaaatt 38994151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 201 - 248
Target Start/End: Complemental strand, 25857194 - 25857149
Alignment:
Q  201 acgtttccgctaaagtgcctattttgagttcacggaggagggaaatta 248  Q
    ||||||||||||  ||||||||||| ||||||||||||||||||||||    
T  25857194 acgtttccgcta--gtgcctattttaagttcacggaggagggaaatta 25857149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 248
Target Start/End: Complemental strand, 4835627 - 4835593
Alignment:
Q  214 agtgcctattttgagttcacggaggagggaaatta 248  Q
    ||||||||||||||||||| |||||||||||||||    
T  4835627 agtgcctattttgagttcatggaggagggaaatta 4835593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 216 - 248
Target Start/End: Original strand, 24380113 - 24380145
Alignment:
Q  216 tgcctattttgagttcacggaggagggaaatta 248  Q
    |||||||||||||||||| ||||||||||||||    
T  24380113 tgcctattttgagttcacagaggagggaaatta 24380145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 88 - 185
Target Start/End: Complemental strand, 37287069 - 37286972
Alignment:
Q  88 ttgtattcccattattattatagtggagatttaagaggcttacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaatttt 185  Q
    ||||||||  |||||||||||||||||  ||||||| ||||| |||||||||| |||||||||  ||||||||||||||||||||| |||||||||||    
T  37287069 ttgtattcttattattattatagtggaagtttaagatgcttaagggtcccgtgatttttcctttttcacattgagaaggttttccatgctaaaatttt 37286972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 16 - 248
Target Start/End: Complemental strand, 9757480 - 9757230
Alignment:
Q  16 atagtgagccaatttgtgagagttgtatctacaaattgagatacata-----gttaggtccacctgaaggtgaagat-ttgtattcccattattattata 109  Q
    |||||||||||||||||||||||  |   |||||||||||| | |||     || || ||||||| | ||||||| | ||||||||||||||| ||||||    
T  9757480 atagtgagccaatttgtgagagtgttccttacaaattgagagatatattatagtgagatccacctaagggtgaagttgttgtattcccattatcattata 9757381  T
Q  110 gtgga---gatttaagaggcttacgggtcccgtggttttt-ccttactcacattgagaaggttttccacgctaaaattttgttgtgtgtc---------- 195  Q
    |||||     ||||||||||  | |||||||||||||||| |||| |||||||||||||||||||||||||||||||| | || ||||||              
T  9757380 gtggaagttttttaagaggcccaagggtcccgtggtttttccctttctcacattgagaaggttttccacgctaaaattctctt-tgtgtcattacgctta 9757282  T
Q  196 -attttacgtttccgctaaagtgcctattttgagttcacggaggagggaaatta 248  Q
     |||| |||||||||||  |||||||||||||||||||||||||| ||||||||    
T  9757281 tatttcacgtttccgct--agtgcctattttgagttcacggaggaaggaaatta 9757230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 88 - 183
Target Start/End: Complemental strand, 42683020 - 42682924
Alignment:
Q  88 ttgtattcccattattattatagtgga-gatttaagaggcttacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaatt 183  Q
    ||||||||||||||| ||||||||||| | |||||||||   | |||||||||| ||||||||| |||||||||||||||||||||||||| |||||    
T  42683020 ttgtattcccattatcattatagtggaagttttaagaggtccaagggtcccgtgatttttcctttctcacattgagaaggttttccacgctgaaatt 42682924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 6e-24; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 16 - 248
Target Start/End: Original strand, 41481548 - 41481797
Alignment:
Q  16 atagtgagccaatttgtgagagttgtatctacaaattgagatacata-----gttaggtccacctgaaggtgaagat-ttgtattcccattattattata 109  Q
    |||||||||||||||||||||||  |   |||||||||||| | |||     || || ||||||| | ||||||| | ||||||||||||||| ||||||    
T  41481548 atagtgagccaatttgtgagagtgttccttacaaattgagagatatattgtagtgagatccacctaagggtgaagttgttgtattcccattatcattata 41481647  T
Q  110 gtgga-gatttaagaggcttacgggtcccgtggttttt--ccttactcacattgagaaggttttccacgctaaaattttgttgtgtgtc----------- 195  Q
    ||||| | ||||||||||  | ||||||||||||||||  |||| |||| ||||||||||||||||||||||||||| | || ||||||               
T  41481648 gtggaagttttaagaggcccaagggtcccgtggttttttccctttctcatattgagaaggttttccacgctaaaattctctt-tgtgtcattacgtttat 41481746  T
Q  196 attttacgtttccgctaaagtgcctattttgagttcacggaggagggaaatta 248  Q
    |||| |||||||||||  |||| ||||||||||||||||||||||||||||||    
T  41481747 atttcacgtttccgct--agtgtctattttgagttcacggaggagggaaatta 41481797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 16 - 248
Target Start/End: Original strand, 36167547 - 36167795
Alignment:
Q  16 atagtgagccaatttgtgagagttgtatctacaaattgagatacata-----gttaggtccacctgaaggtgaagat-ttgtattcccattattattata 109  Q
    |||||||||||||||||||||||  |   |||||||||||| | |||     || || ||||||| | ||||||| | ||||||||||||||| ||||||    
T  36167547 atagtgagccaatttgtgagagtgttccttacaaattgagagatatattatagtgagatccacctaagggtgaagttgttgtattcccattatcattata 36167646  T
Q  110 gtgga-gatttaagaggcttacgggtcccgtggttttt--ccttactcacattgagaaggttttccacgctaaaattttgttgtgtgtc----------- 195  Q
    ||||| | ||||||||||  | |||||| |||||||||  |||| |||| ||||||||||||||||||||||||||| | || ||||||               
T  36167647 gtggaagttttaagaggcccaagggtcc-gtggttttttccctttctcatattgagaaggttttccacgctaaaattctctt-tgtgtcattacgtttat 36167744  T
Q  196 attttacgtttccgctaaagtgcctattttgagttcacggaggagggaaatta 248  Q
    |||| |||||||||||  |||||||||||||||||||||||||||||||||||    
T  36167745 atttcacgtttccgct--agtgcctattttgagttcacggaggagggaaatta 36167795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 88 - 183
Target Start/End: Complemental strand, 18951309 - 18951211
Alignment:
Q  88 ttgtattcccattattattatagtgga-gatttaagaggcttacgggtcccgtggttttt--ccttactcacattgagaaggttttccacgctaaaatt 183  Q
    ||||||||||||||| ||||||||||| | ||||||| ||  |  |||| ||||||||||  |||| |||||||||||||||||||||| |||||||||    
T  18951309 ttgtattcccattatcattatagtggaagttttaagaagcccaaaggtctcgtggttttttccctttctcacattgagaaggttttccatgctaaaatt 18951211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 203 - 248
Target Start/End: Complemental strand, 18951185 - 18951142
Alignment:
Q  203 gtttccgctaaagtgcctattttgagttcacggaggagggaaatta 248  Q
    ||||||||||  ||||||||||||||||||||||||||| ||||||    
T  18951185 gtttccgcta--gtgcctattttgagttcacggaggaggcaaatta 18951142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0479 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: scaffold0479
Description:

Target: scaffold0479; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 88 - 183
Target Start/End: Original strand, 2747 - 2845
Alignment:
Q  88 ttgtattcccattattattatagtgga-gatttaagaggcttacgggtcccgtggttttt--ccttactcacattgagaaggttttccacgctaaaatt 183  Q
    ||||||||||||||| ||||||||||| | ||||||||||  | ||||||||||||||||  |||| ||||||||||||||||||||||||||||||||    
T  2747 ttgtattcccattatcattatagtggaagttttaagaggcccaagggtcccgtggttttttccctttctcacattgagaaggttttccacgctaaaatt 2845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0479; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 248
Target Start/End: Original strand, 2873 - 2918
Alignment:
Q  201 acgtttccgctaaagtgcctattttgagttcacggaggagggaaatta 248  Q
    ||||||||||||  ||| ||||||||||||||||||| ||||||||||    
T  2873 acgtttccgcta--gtgtctattttgagttcacggagaagggaaatta 2918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 88 - 181
Target Start/End: Original strand, 37037942 - 37038035
Alignment:
Q  88 ttgtattcccattattattatagtggagatttaagaggcttacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaa 181  Q
    |||||||| ||||||  |||||||| |  ||||||||||  | |||||||||||||| ||||| ||||||||||||||||||||| ||||||||    
T  37037942 ttgtattctcattatcgttatagtgaaagtttaagaggcccaagggtcccgtggtttctcctttctcacattgagaaggttttcctcgctaaaa 37038035  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 248
Target Start/End: Original strand, 37038074 - 37038108
Alignment:
Q  214 agtgcctattttgagttcacggaggagggaaatta 248  Q
    ||||||||||||||||||||||||||| |||||||    
T  37038074 agtgcctattttgagttcacggaggagagaaatta 37038108  T

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Target: scaffold0003 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 88 - 183
Target Start/End: Complemental strand, 342404 - 342306
Alignment:
Q  88 ttgtattcccattattattatagtgga-gatttaagaggcttacgggtcccgtggttt-ttcc-ttactcacattgagaaggttttccacgctaaaatt 183  Q
    ||||||||||||||| ||||||||||| | ||||||||||  | || ||||||||||| |||| || |||| |||||||||||||| ||||||||||||    
T  342404 ttgtattcccattatcattatagtggaagttttaagaggcccaaggatcccgtggtttcttccatttctcatattgagaaggtttttcacgctaaaatt 342306  T

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Target: scaffold0003; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 248
Target Start/End: Complemental strand, 342269 - 342235
Alignment:
Q  214 agtgcctattttgagttcacggaggagggaaatta 248  Q
    |||||||||||||||||||||||||||| ||||||    
T  342269 agtgcctattttgagttcacggaggaggaaaatta 342235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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