View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2186_low_10 (Length: 234)
Name: NF2186_low_10
Description: NF2186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2186_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-119; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 41757841 - 41758060
Alignment:
| Q |
1 |
gcaacagtgtgtagacagcattccaaccattttgagaagggtgaacattgtcccaaaagaatgaaagctttggtttctcacataaactgtatttcttttc |
100 |
Q |
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| T |
41757841 |
gcaacagtgtgtagacagcatgccaaccattttgagaagggtgaacattgtcccaaaagaatgaaagctttggtttctcacataaactgtatttcttttc |
41757940 |
T |
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| Q |
101 |
tccattatcatccacttttccacaagtatttgtcaaaccatctccctcacaacatgatttcagtggattcatcagggttgagttttctgtacaatggaga |
200 |
Q |
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| T |
41757941 |
tccattatcatccacttttccacaagtatttgtcaaaccatctccctcacaacatgatttcagtggattcatcagggttgagttttctgtacaatggaga |
41758040 |
T |
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| Q |
201 |
aaaaatcagaaagaatatat |
220 |
Q |
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| T |
41758041 |
aaaaatcagaaagaatatat |
41758060 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 41753457 - 41753645
Alignment:
| Q |
1 |
gcaacagtgtgtagacagcattccaaccattttgagaagggtgaacattgtcccaaaagaatgaaagctttggtttctcacataaactgtatttcttttc |
100 |
Q |
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| T |
41753457 |
gcaacaatgtatagacagcttgccaaccattttgagaaggatgtacaccgtcccaaaagaatgaaagctctggtttctcacatacactatatttcttttc |
41753556 |
T |
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| Q |
101 |
tccattatcatccacttttccacaagtatttgtcaaaccatctccctcacaacatgatttcagtggattcatcagggttgagttttctg |
189 |
Q |
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| T |
41753557 |
tcctttatcatccacacttccacaattatttttcaaaccatctcccacacaacacgctttcaatggattcatcagtgttgagttttctg |
41753645 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 18 - 203
Target Start/End: Original strand, 41747112 - 41747297
Alignment:
| Q |
18 |
gcattccaaccattttgagaagggtgaacattgtcccaaaagaatgaaagctttggtttctcacataaactgtatttcttttctccattatcatccactt |
117 |
Q |
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|||| |||||||||||||||||| || | ||||| |||| ||||||||||| |||||| ||||||| ||| ||||||||| |||| || ||||| || |
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| T |
41747112 |
gcatgccaaccattttgagaaggatggaaattgttccaatagaatgaaagccctggtttatcacatacactatatttctttgctcctttctcatcgacac |
41747211 |
T |
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| Q |
118 |
ttccacaagtatttgtcaaaccatctccctcacaacatgatttcagtggattcatcagggttgagttttctgtacaatggagaaaa |
203 |
Q |
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| T |
41747212 |
ttccacaataataacttgaactcactcccacacaacatggttgcaatggattcatcaatgttgagtttgctgcataatggagaaaa |
41747297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 23 - 203
Target Start/End: Original strand, 41732453 - 41732633
Alignment:
| Q |
23 |
ccaaccattttgagaagggtgaacattgtcccaaaagaatgaaagctttggtttctcacataaactgtatttcttttctccattatcatccacttttcca |
122 |
Q |
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| T |
41732453 |
ccaaccattttgagaagggtgaactgtgtcccaaaagagtgaagactcaagcttctcacatacactatatttccttgctcctttattatcaacacttcca |
41732552 |
T |
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| Q |
123 |
caagtatttgtcaaaccatctccctcacaacatgatttcagtggattcatcagggttgagttttctgtacaatggagaaaa |
203 |
Q |
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||| || | ||||| | ||||||| |||||| | || || |||||||||| |||||||||||| |||||||| |||| |
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| T |
41732553 |
caaaaatatttcaaatcctctcccttacaacacggttgcaacggattcatcactgttgagttttctaaacaatggataaaa |
41732633 |
T |
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