View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2186_low_12 (Length: 230)
Name: NF2186_low_12
Description: NF2186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2186_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 168; Significance: 3e-90; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 14 - 218
Target Start/End: Original strand, 45211888 - 45212096
Alignment:
| Q |
14 |
atcatttcttgcaacttttgagtaggagtattgtagagtgatatacatattgagctcggctatagattc----ttttaattttatttgagatgatgaata |
109 |
Q |
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| T |
45211888 |
atcatttcttgcaactcttgagtaggagtattgtagagtgatatacatattgagctcggctatagattcattcttttaattttatttgaggtgatgaata |
45211987 |
T |
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| Q |
110 |
tatttgttaaggtgcttccgtggatgtaggcaagaggggccaattcacataaatctctgttttacatcaaagattcatgggtgtgaggctaacttcgatg |
209 |
Q |
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| T |
45211988 |
tatttgttaaggtgcttccgtggatgtaggcaagaggtgccaattcacatcaatctctgttttacatcaaagattcatgggtgtgtggctaacttcgatg |
45212087 |
T |
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| Q |
210 |
gtctgtgct |
218 |
Q |
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| T |
45212088 |
gtgtgtgct |
45212096 |
T |
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Back To:
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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 116
Target Start/End: Original strand, 15679873 - 15679903
Alignment:
| Q |
86 |
taattttatttgagatgatgaatatatttgt |
116 |
Q |
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| T |
15679873 |
taattttatttgagatgatgaatatatttgt |
15679903 |
T |
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