View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2186_low_2 (Length: 396)
Name: NF2186_low_2
Description: NF2186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2186_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 72 - 310
Target Start/End: Original strand, 9862794 - 9863041
Alignment:
| Q |
72 |
attttgaatttgttgatgaaaatagtgaaagcagtgaaaacaacgaagatgaagaagataatggattggttcctgcagcaaagtcatgtgttgagggatt |
171 |
Q |
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| T |
9862794 |
attttgaatttgttgatgaaaatagtgaaagcagtgaaaacagcgaagatgaagaagataatggattggttcctgcggcaaagtcatgtgttgagggatt |
9862893 |
T |
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| Q |
172 |
ggaggaagttgaaaaggagagaaaatgtgctatttgttttgaagatttt-aagtttgtcttagtatgccatgtt--------tttcattcaaaaccctct |
262 |
Q |
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| T |
9862894 |
ggaggaagttgaaaaggagagaaaatgtgctatttgttttgaagattttaaagtttgtcttagtatgccatgtttgcacacatttcattcaaaaccctct |
9862993 |
T |
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| Q |
263 |
atgtaggtttaagttgtcaactagaacaagtgaatgaagggtaccttt |
310 |
Q |
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| T |
9862994 |
atgtaagtttaagttgtcaactagaacaagtgaatgaagggtaccttt |
9863041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 306 - 375
Target Start/End: Original strand, 9863405 - 9863474
Alignment:
| Q |
306 |
ccttttgttattactaggctttgnnnnnnngaacaagattactaggatttgataatgaattgtcatatgt |
375 |
Q |
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| T |
9863405 |
ccttttgttattactaggctttgtttttttgaacaagattactaggatttgagaatgaattatcatatgt |
9863474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 194 - 222
Target Start/End: Original strand, 9857967 - 9857995
Alignment:
| Q |
194 |
aaatgtgctatttgttttgaagattttaa |
222 |
Q |
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| T |
9857967 |
aaatgtgctatttgttttgaagattttaa |
9857995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 73
Target Start/End: Original strand, 26042285 - 26042347
Alignment:
| Q |
11 |
caaagggttctttctattcaagtcgatcttggcgtaaatagggctagtgaagatgatactgat |
73 |
Q |
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| T |
26042285 |
caaagggttctttctattcgagtcgttcttagcattacaagggccagtgaagatgatactgat |
26042347 |
T |
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