View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2187_high_5 (Length: 206)
Name: NF2187_high_5
Description: NF2187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2187_high_5 |
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Alignment Details
Target: chr6 (Bit Score: 115; Significance: 1e-58; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 13 - 154
Target Start/End: Complemental strand, 34368120 - 34367981
Alignment:
| Q |
13 |
aatatcgaagacgaatttgatagctactcgaaaaaacatagaagagggaagcaaaatgtaaacaaagagagctgcacatttatatcttaatccattaact |
112 |
Q |
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| T |
34368120 |
aatatcgaagactaatttgataggtactcgaaaaaacatagaagagggaagcaaaatgtaaacaaagagagctgcacatttatatcttaatccattaacc |
34368021 |
T |
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| Q |
113 |
atctctagcaggttttctcacattttgagtttcatgtcaatt |
154 |
Q |
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| T |
34368020 |
atctctaacaggttttctcaca--ttgagtttcatgtcaatt |
34367981 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 57 - 153
Target Start/End: Complemental strand, 34382594 - 34382498
Alignment:
| Q |
57 |
agggaagcaaaatgtaaacaaagagagctgcacatttatatcttaatccattaactatctctagcaggttttctcacattttgagtttcatgtcaat |
153 |
Q |
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| T |
34382594 |
agggaagcaaaatgtaaacatagagagctacacatttatctcctaatccattaactatctctaacagcttttctcacattttgagtttcatgtcaat |
34382498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 154 - 188
Target Start/End: Complemental strand, 34367964 - 34367930
Alignment:
| Q |
154 |
tgtttcctttttccgaattttctccaacaacatat |
188 |
Q |
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| T |
34367964 |
tgtttcctttttccgaattttctccaacaacatat |
34367930 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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