View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2187_low_3 (Length: 406)
Name: NF2187_low_3
Description: NF2187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2187_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 1 - 395
Target Start/End: Original strand, 32861028 - 32861428
Alignment:
| Q |
1 |
cggtgagtatgcgtgatttctggatttgagatccatttctttgaagctgtttgtattctttattgttagtaacactgttttgatttcttcatggaagtga |
100 |
Q |
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| T |
32861028 |
cggtgagtatgcgtgatttctggatttgagatccatttctttgaagctgtttgtattctttattgttagtaacactgttttgatttcttcatggaagtga |
32861127 |
T |
|
| Q |
101 |
tttgagctcgcacaaggaaaatagttagaaattgcacaagctcttaaaccttctttggtgaaccacgaggctcatttttctgaagaaaagaaaaatctga |
200 |
Q |
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| T |
32861128 |
tttgagctcgcacaaggaaaatagttagaaattgcacaagctcttaaaccttctttggtgaaccacgaggctcatttttctgaaaaaaagaaaaatctga |
32861227 |
T |
|
| Q |
201 |
tccagctttggtaagttctttggtgaacctctaagcttttgaaattacaaaatatttagagt--cacgtaggcagtatttaccaatgatttcgtttcaaa |
298 |
Q |
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|||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
32861228 |
tccagctttggtaaattctttggtgaacctctaagctttcgaaattacaaaatatttagagtcacacgtaggcagtatttaccaatgatttcgtttcaaa |
32861327 |
T |
|
| Q |
299 |
ttagttttaaagttattcttggggtgcaggaattatatcatgagt----cacttatactatcttcattccagtgttggtaagttcatgccattttattca |
394 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32861328 |
ttagttttaaagttattcttggggtgcaggaattatatcatgagtaatacacttatactatcttcattccagtgttggtaagttcatgccattttattca |
32861427 |
T |
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| Q |
395 |
t |
395 |
Q |
| |
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| |
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|
| T |
32861428 |
t |
32861428 |
T |
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