View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2188_high_3 (Length: 413)
Name: NF2188_high_3
Description: NF2188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2188_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 48 - 337
Target Start/End: Original strand, 42061004 - 42061294
Alignment:
| Q |
48 |
ttctgatctaataggttaccgatcgaactaccatcaacattaactcaatatgtagagcgatgaataaaaatttacgacaaggcttgtctacatatcatat |
147 |
Q |
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| T |
42061004 |
ttctgatctactaggttacctatcgaactaccatcaacattaattcaatatgtagagcgatgaataaaaatttatgacgaggcttgtctacatatcatat |
42061103 |
T |
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| Q |
148 |
atttcatattttcttgtnnnnnnnnn--tatgtatttcatattttctgcaaatacaaacagaaaaactcatcggatgaaaagtaaatacatttttaattt |
245 |
Q |
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| T |
42061104 |
atttcatattttcttgtaaaaaaaaaaatatgtatttcatattttttgcaaatacaaacagaacaactcatcggatgaaaagtaaatacatttttaattt |
42061203 |
T |
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| Q |
246 |
taatattctttgtatattgttgcactatgtgaacaaaatccatcatttatacctctcacttgagaccgataatagctcagatcaaccttatc |
337 |
Q |
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| T |
42061204 |
taatattctttgtat-ttgttgcactgtgtgaaccaaatccatcatttatacctctcacttgagaccgagaatagctcagatcaaccttatc |
42061294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 11 - 42
Target Start/End: Original strand, 42060898 - 42060929
Alignment:
| Q |
11 |
cagagagtgaaggagaataagacaatccagga |
42 |
Q |
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| T |
42060898 |
cagagagtgaaggagaataagacaatccagga |
42060929 |
T |
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