View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2188_high_9 (Length: 250)
Name: NF2188_high_9
Description: NF2188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2188_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 26627541 - 26627303
Alignment:
| Q |
1 |
tatttcttataactttacaaagcaatacgcagttaaagcttttaattgctgcaattaataggaattactaccaataaaagcacaatggtcatttacattn |
100 |
Q |
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| T |
26627541 |
tatttcttttaactttacaaagcaatacgcagttaaagcttttaattgctgcaattaataggaattactaccaataaaagcacaatggtcatttacatta |
26627442 |
T |
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| Q |
101 |
nnnnnnttctataaggagttgtcttctccctataactttgtgcaaattttcgattcaaaggcttaaacagacaactgatccggtaatacgatcatgttag |
200 |
Q |
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| T |
26627441 |
aaaaatttctataaggagttgtcttctccctataactttgtgcaaattttcgattcaaaggcttaaacagacaactgatccggtaatacgatcatgttag |
26627342 |
T |
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| Q |
201 |
atcttacgacagcaaaaaatgtcacggatttcgctctct |
239 |
Q |
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| T |
26627341 |
atcttacgacagcaaaaaatgtcacggatttcgctctct |
26627303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 50941526 - 50941363
Alignment:
| Q |
1 |
tatttcttataactttacaaagcaatacgcagttaaagcttttaattgctgcaattaataggaattactaccaataaaagcacaatggtcatttacat-t |
99 |
Q |
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| T |
50941526 |
tatttcctataattttacaaagcaatacgcagttaaggcttataattgctggtattaataggaattaatacaaataaaagcacaatggttatttacataa |
50941427 |
T |
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| Q |
100 |
nnnnnnnttctataaggagttgtcttctccctataactttgtgc-aaattttcgattcaaaggc |
162 |
Q |
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| T |
50941426 |
aaaaactttctataaagagttgtcttctccttataactttgtgcaaaattttcgattcaaaggc |
50941363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 50941261 - 50941114
Alignment:
| Q |
1 |
tatttcttataactttacaaagcaatacgcagttaaagcttttaattgctgcaattaataggaattactaccaataaaagcacaatggtcatttacattn |
100 |
Q |
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|||||| ||||| |||||||||||||||||| |||| || | |||| |||||||||||||||||||| ||| ||||||| ||||||||||||||| | |
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| T |
50941261 |
tatttcctataattttacaaagcaatacgcatttaaggcgtataatcgctgcaattaataggaattaatacaaataaaaacacaatggtcatttatgtaa |
50941162 |
T |
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| Q |
101 |
nnnnnnttctataaggagttgtcttctccctataactttgtgcaaatt |
148 |
Q |
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| T |
50941161 |
aaaactttctataaagagttgtcttctccctataactttgtgcaaatt |
50941114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 43 - 95
Target Start/End: Complemental strand, 50941109 - 50941057
Alignment:
| Q |
43 |
taattgctgcaattaataggaattactaccaataaaagcacaatggtcattta |
95 |
Q |
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||||||||||||||||||||||||| || ||||||||||||||||||||||| |
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| T |
50941109 |
taattgctgcaattaataggaattaatataaataaaagcacaatggtcattta |
50941057 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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