View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2188_low_1 (Length: 621)
Name: NF2188_low_1
Description: NF2188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2188_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 533; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 533; E-Value: 0
Query Start/End: Original strand, 17 - 602
Target Start/End: Original strand, 35409851 - 35410435
Alignment:
| Q |
17 |
tcaggggtgtttagtttaggccaccaggtagcatttttatgatcagggtgccccatgttgatgaattctttgtaccaggactggagttcattgtcagaag |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35409851 |
tcaggggtgtttagtttaggccaccaggtagcatttttatgatcagggtgccccatgttgatgaattctttgtaccaggactggagttcattgtcagaag |
35409950 |
T |
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| Q |
117 |
aaacggcattcaaatctttgtagtaatggttcacataggtcctgaccaacttctctatactagtccatatgaggagtccatcagccgcataaggataatc |
216 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
35409951 |
aaatggcattcaaatctttgtagtaatggttcacataggtcctgaccaacttctctatactagaccatatgaggagtccatcagccgcataaggataatc |
35410050 |
T |
|
| Q |
217 |
ttcaataagtagtctaatgccatgtggctgagtggcatctggaaccgccaaacctctgnnnnnnnngaaagaataaatagttagatcttatcttcttcac |
316 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
35410051 |
ttcaataagtagtctaatgccatgtggccgagtggcatctggaaccgccaaacctctgaaaaaaa-gaaagaataaatagttagatcttatcttcttcac |
35410149 |
T |
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| Q |
317 |
ttagtgaaagaacaaatgaaagaacaagtaaaaccaagctcattgcacagaaaactttgatgaaggaaactatcttctttaccttcttttaagatcggca |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35410150 |
ttagtgaaagaacaaatgaaagaacaagtaaaaccaagctcattgagcagaaaactttgatgaaggaaactatcttctttaccttcttttaagatcggca |
35410249 |
T |
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| Q |
417 |
ggaagaccttccatgtcaaatcgccaccaatctttataggcagcacacgtaatttgcatacagtatctcccgggagtgtagtttttctctatggaaccgt |
516 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35410250 |
ggaagaccttccatgtcaaaccgccaccaatctttataggcagcacacgtaatttgcatacagtatctcccgggagtgtagtttttctctatggaaccgt |
35410349 |
T |
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| Q |
517 |
ctgcattaacgagtacctcgcgggctgttgcatttgtcttgagtgtgtatcgcatatggggatgcagaagcttgaatacaggatgc |
602 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35410350 |
ctgcattaacgagtacctcgcgggctgttgcatttgtcttgagtgtgtatcgcatatggggatgcagaagcttgaatacaggatgc |
35410435 |
T |
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