View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2188_low_12 (Length: 270)
Name: NF2188_low_12
Description: NF2188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2188_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 19 - 260
Target Start/End: Original strand, 41369643 - 41369884
Alignment:
| Q |
19 |
ggtatggtgcctgaggagaaactatcactaaccattaaatctctatgttgaattttcaagctcccttgatacaaagggtaacttggcaccttaatagaat |
118 |
Q |
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| T |
41369643 |
ggtatggtgcctgaggagaaactatcactaaccattaaatctctatgttgaattttcaagctcccttgatacaaagggtaacttggcaccttaatagaat |
41369742 |
T |
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| Q |
119 |
cttccgattcgctcaggtgagaatagtcttccatacaggtagcgcaatattcttctttgttatttagagcaggaaatatttgttcttctgctgcttgtga |
218 |
Q |
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| T |
41369743 |
cttccgattcgctcaggtgagaatagtcttccatacaggtagcgcaatattcttctttgttatttagagcaggaaaaatttgttcttctgctgcttgtga |
41369842 |
T |
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| Q |
219 |
aataaatttttcatctctagcttggattttcattctcctttg |
260 |
Q |
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| T |
41369843 |
aatattttttttatctctagcttggattttcatgctcctttg |
41369884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 89; Significance: 6e-43; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 32 - 248
Target Start/End: Complemental strand, 24693947 - 24693731
Alignment:
| Q |
32 |
aggagaaactatcactaaccattaaatctctatgttgaattttcaagctcccttgatacaaagggtaacttggcaccttaatagaatcttccgattcgct |
131 |
Q |
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| T |
24693947 |
aggagaaactattaccaaccattaaatctctaggttggttttccaagctcccttgatgcatagggtaactcaaaaccttaatagaatcttcagattcact |
24693848 |
T |
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| Q |
132 |
caggtgagaatagtcttccatacaggtagcgcaatattcttctttgttatttagagcaggaaatatttgttcttctgctgcttgtgaaataaatttttca |
231 |
Q |
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| T |
24693847 |
caggtgagaatagtcttctgtacaggtttcacaatattctcctttgtcgtatatggcaggaaaaatttgctcttctgctacttgtaaaataatttgttca |
24693748 |
T |
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| Q |
232 |
tctctagcttggatttt |
248 |
Q |
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| T |
24693747 |
tctctaggttggatttt |
24693731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 32 - 171
Target Start/End: Original strand, 24479146 - 24479285
Alignment:
| Q |
32 |
aggagaaactatcactaaccattaaatctctatgttgaattttcaagctcccttgatacaaagggtaacttggcaccttaatagaatcttccgattcgct |
131 |
Q |
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||||||||||||||||||| ||| |||||||||||| ||||||||||||||||||||| |||| | | ||||||||||||||||| ||||| || |
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| T |
24479146 |
aggagaaactatcactaactattttatctctatgttggattttcaagctcccttgatacttggggttattcaacaccttaatagaatctttggattcact |
24479245 |
T |
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| Q |
132 |
caggtgagaatagtcttccatacaggtagcgcaatattct |
171 |
Q |
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| T |
24479246 |
caggtgagaatagtcttctgtacaagtagcacaatattct |
24479285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 45 - 131
Target Start/End: Original strand, 24455764 - 24455850
Alignment:
| Q |
45 |
actaaccattaaatctctatgttgaattttcaagctcccttgatacaaagggtaacttggcaccttaatagaatcttccgattcgct |
131 |
Q |
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|||| ||||||||||||| |||| ||||||||||||||||||| | ||||||||||||| |||||||||||||||| || ||||| |
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| T |
24455764 |
actagccattaaatctctcggttggattttcaagctcccttgatttatagggtaacttggccccttaatagaatcttcagagtcgct |
24455850 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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