View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2188_low_16 (Length: 238)
Name: NF2188_low_16
Description: NF2188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2188_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 16 - 219
Target Start/End: Complemental strand, 41847611 - 41847408
Alignment:
| Q |
16 |
cacatggtatactgcaaaaaccccaccagcactatataaacccctattcgtcacaagcataactcacactctcctctcttaacctctagtagcttactag |
115 |
Q |
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| T |
41847611 |
cacatggtatactgcaaaaaccccaccagcactatataaacccctattcgtcacaagcataactcacactctcctctcttaacctctagtagcttactag |
41847512 |
T |
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| Q |
116 |
tatttgcaatatacaatactagctattactacaagagagtaactaagatggcttccaaaacttgttcctcccttgctattttcctcacaatcaacattct |
215 |
Q |
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| T |
41847511 |
tatttgcaatatacaatactagctattactacaagagagtaactaagatggcttccaaaacttgttcctcccttgctattttcctcacaatcaacattct |
41847412 |
T |
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| Q |
216 |
cttc |
219 |
Q |
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|||| |
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| T |
41847411 |
cttc |
41847408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 159 - 210
Target Start/End: Complemental strand, 41833797 - 41833746
Alignment:
| Q |
159 |
taagatggcttccaaaacttgttcctcccttgctattttcctcacaatcaac |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41833797 |
taagatggcttccaaaacttgttcctcccttgctattttcctcacaatcaac |
41833746 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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