View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2188_low_17 (Length: 234)
Name: NF2188_low_17
Description: NF2188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2188_low_17 |
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| [»] scaffold0001 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 26627570 - 26627787
Alignment:
| Q |
1 |
gatgactgcatagtgaataaaagcaattaaatgctattactgtataaaagcaatttaatcaaactaattgctcagtacaaattactacctattgaaagca |
100 |
Q |
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| T |
26627570 |
gatgactgcataggaaataaaagcaattaaatgctattactgtataaaagcaatttaatcaaactaattgctcagtacaaattactacctattgaaagca |
26627669 |
T |
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| Q |
101 |
atatggctgcaaacatcaaactctcacaacagttgggcgcttgacttaaatgtatatggtgtcgttcatgccagcatgtagaaacccaactttaaccatg |
200 |
Q |
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| T |
26627670 |
atatggctgcaaacatcaaactctcacaacagttgggcgtttgacttgaatgtatatggtgtcgttcatgccagcatgtggaaacccaactttaatcatg |
26627769 |
T |
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| Q |
201 |
acaccttcatcaaatctg |
218 |
Q |
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| T |
26627770 |
acaccttcatcaagtctg |
26627787 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 107 - 213
Target Start/End: Original strand, 28503250 - 28503356
Alignment:
| Q |
107 |
ctgcaaacatcaaactctcacaacagttgggcgcttgacttaaatgtatatggtgtcgttcatgccagcatgtagaaacccaactttaaccatgacacct |
206 |
Q |
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||||| ||||||||||||||||||||||| ||||||||||| |||||||||| |||||||||||| ||||||| |||||||||||||||||||||||||| |
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| T |
28503250 |
ctgcagacatcaaactctcacaacagttgagcgcttgacttgaatgtatatgttgtcgttcatgcaagcatgtggaaacccaactttaaccatgacacct |
28503349 |
T |
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| Q |
207 |
tcatcaa |
213 |
Q |
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| T |
28503350 |
tcatcaa |
28503356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 82; Significance: 7e-39; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 107 - 220
Target Start/End: Complemental strand, 407505 - 407392
Alignment:
| Q |
107 |
ctgcaaacatcaaactctcacaacagttgggcgcttgacttaaatgtatatggtgtcgttcatgccagcatgtagaaacccaactttaaccatgacacct |
206 |
Q |
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||||||||||||||||||||||||||||| ||| || |||| |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
407505 |
ctgcaaacatcaaactctcacaacagttgagcgattaacttgaatgtagatggtgtcgttcatgccagcatgtggaaacccaactttaaccatgacacct |
407406 |
T |
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| Q |
207 |
tcatcaaatctgtg |
220 |
Q |
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|| |||| |||||| |
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| T |
407405 |
tcctcaagtctgtg |
407392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 107 - 218
Target Start/End: Original strand, 39334395 - 39334504
Alignment:
| Q |
107 |
ctgcaaacatcaaactctcacaacagttgggcgcttgacttaaatgtatatggtgtcgttcatgccagcatgtagaaacccaactttaaccatgacacct |
206 |
Q |
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||||| ||||||||||| ||| ||||||||||||||||| ||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |
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| T |
39334395 |
ctgcagacatcaaactc--acagtagttgggcgcttgacttgaatgtatatggtgtcattcatgccagcatgtgaaaacccaactttaaccatgacacct |
39334492 |
T |
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| Q |
207 |
tcatcaaatctg |
218 |
Q |
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||||||| |||| |
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| T |
39334493 |
tcatcaagtctg |
39334504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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