View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2188_low_2 (Length: 543)

Name: NF2188_low_2
Description: NF2188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2188_low_2
NF2188_low_2
[»] chr4 (8 HSPs)
chr4 (313-543)||(4337083-4337313)
chr4 (18-259)||(4337367-4337607)
chr4 (313-543)||(4319177-4319416)
chr4 (326-532)||(4122538-4122747)
chr4 (427-543)||(4132616-4132729)
chr4 (314-534)||(4346553-4346779)
chr4 (320-377)||(4132515-4132572)
chr4 (427-534)||(4362742-4362849)
[»] chr6 (7 HSPs)
chr6 (427-543)||(5065447-5065563)
chr6 (432-542)||(5253715-5253825)
chr6 (427-543)||(5126627-5126743)
chr6 (427-533)||(5177930-5178036)
chr6 (427-533)||(5279755-5279861)
chr6 (427-543)||(5346210-5346326)
chr6 (427-533)||(5688901-5689007)
[»] chr7 (1 HSPs)
chr7 (427-543)||(36212919-36213035)
[»] chr3 (2 HSPs)
chr3 (439-543)||(47985403-47985507)
chr3 (439-543)||(48003977-48004081)


Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-122; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 313 - 543
Target Start/End: Complemental strand, 4337313 - 4337083
Alignment:
Q  313 aaatcatctgcaggctctacttgaagagagatcctcttggcagcacattcatttttatcaccactctcaacgagaacattctcatctggtgcatgacatt 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4337313 aaatcatctgcaggctctacttgaagagagatcctcttggcagcacattcatttttatcaccactctcaacgagaacattctcatctggtgcatgacatt 4337214  T
Q  413 gctcaaatttttcgtcatgatatatgagataaactgttgtcctcatcacaatataactgttcccaaaaacaacaacaatctcgactttatcaccaggttc 512  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4337213 gctcaaatttttcgtcatgatatatgagataaactgttgtcctcatcacaatataactgttcccaaaaacaacaacaatctcgactttatcaccaggttc 4337114  T
Q  513 catatttgataccactctctgctcctcctca 543  Q
    ||||||||||||||||||||||  |||||||    
T  4337113 catatttgataccactctctgccactcctca 4337083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 18 - 259
Target Start/End: Complemental strand, 4337607 - 4337367
Alignment:
Q  18 gctttgtggtctgaagacttgggatctaggagcgtgctcttctctaggtatcgaatttgaattccccaagtaccaaaaattcttgtgttgggcccaatgg 117  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          
T  4337607 gctttgtggtgtgaagacttgggatctaggagcgtgctcttctctaggtatcgaatttgaattccccaagtaccaaaaattcttgtgttgggccgctcc- 4337509  T
Q  118 agatacaaagctttgttcttgtagcaattggggccccc-gctagtggttagtgggatttatccccc-ggattagttggtccttaggccggatatggagtt 215  Q
      ||||||||||||||||| |||||||||||| ||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  4337508 --atacaaagctttgttctggtagcaattgggcccccccgctagtggttagtgggatttatccccccggattagttggtccttaggccggatatggagtt 4337411  T
Q  216 ttcaagagnnnnnnntcagctcaaattaaaatttacctggcaag 259  Q
    ||||||||       |||||||||||||||||||||||||||||    
T  4337410 ttcaagagaaaaaaatcagctcaaattaaaatttacctggcaag 4337367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 313 - 543
Target Start/End: Original strand, 4319177 - 4319416
Alignment:
Q  313 aaatcatctgcaggctctacttgaagagagatcctcttggcagcacattcatttttatcaccactctcaacgagaacattctcatctggtgcatgacatt 412  Q
    |||||||||| ||||||||||||  ||||||||||| |||||||||||||||||| ||||||  | ||||| |||||||||| |||||||| ||||||||    
T  4319177 aaatcatctgtaggctctacttggcgagagatcctcatggcagcacattcattttcatcaccgatatcaacaagaacattcttatctggtgtatgacatt 4319276  T
Q  413 gctcaaatttttcg---------tcatgatatatgagataaactgttgtcctcatcacaatataactgttcccaaaaacaacaacaatctcgactttatc 503  Q
    |||| ||| |||||         |||| ||||||||||||||||| |||| ||||||||||  |||||||||||||||| ||||||||||| || || ||    
T  4319277 gctccaatatttcgacgactggttcatcatatatgagataaactgctgtcttcatcacaatgaaactgttcccaaaaacgacaacaatctccaccttgtc 4319376  T
Q  504 accaggttccatatttgataccactctctgctcctcctca 543  Q
    ||||||||||||||||| ||| |||||||||  |||||||    
T  4319377 accaggttccatatttgttacaactctctgccactcctca 4319416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 326 - 532
Target Start/End: Original strand, 4122538 - 4122747
Alignment:
Q  326 gctctacttgaagagagatcctcttggcagcacattcatttttatcaccactctcaacgagaacattctcatctggtgcatgacattgctcaaatttttc 425  Q
    |||||||||| ||||||| |||||||||||| |||||||||| | ||||||   ||||   |||||||| || ||||||||| |||||||| | ||||||    
T  4122538 gctctacttgcagagagaccctcttggcagcgcattcattttcagcaccac---caac---aacattcttatttggtgcatggcattgctctattttttc 4122631  T
Q  426 g---------tcatgatatatgagataaactgttgtcctcatcacaatataactgttcccaaaaacaacaacaatctcgactttatcaccaggttccata 516  Q
              |||| ||||||||||||||||| |||| ||||||||||  ||||||| |||||||||||||||||||| ||||| |||||||||||||||    
T  4122632 accgattggttcatcatatatgagataaactgatgtcttcatcacaatgaaactgtttccaaaaacaacaacaatctccactttgtcaccaggttccata 4122731  T
Q  517 tttgataccactctct 532  Q
    ||||||||||||||||    
T  4122732 tttgataccactctct 4122747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 427 - 543
Target Start/End: Original strand, 4132616 - 4132729
Alignment:
Q  427 tcatgatatatgagataaactgttgtcctcatcacaatataactgttcccaaaaacaacaacaatctcgactttatcaccaggttccatatttgatacca 526  Q
    |||| ||||||||||||||||| |||| ||||||||||  |||||||||||||||||   |||||||||||||| ||||||||||||||||||||||| |    
T  4132616 tcatcatatatgagataaactgctgtcttcatcacaatgaaactgttcccaaaaaca---acaatctcgactttgtcaccaggttccatatttgatacta 4132712  T
Q  527 ctctctgctcctcctca 543  Q
    ||||||||  |||||||    
T  4132713 ctctctgccactcctca 4132729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 314 - 534
Target Start/End: Complemental strand, 4346779 - 4346553
Alignment:
Q  314 aatcatctgcaggctctacttgaagagagatcctcttggcagcacattcatttttatcaccactctcaacgagaacattctcatctggtgcatgacattg 413  Q
    |||||||||  | |||||||||| |||| |||||||||| ||  |||||||||| ||||||||   |||| | |||||||  ||||||||||| ||| ||    
T  4346779 aatcatctgtggactctacttgaggagaaatcctcttggaagagcattcattttcatcaccac---caacaataacattcatatctggtgcatcacaatg 4346683  T
Q  414 ctcaaatttttcgtca---------tgatatatgagataaactgttgtcctcatcacaatataactgttcccaaaaacaacaacaatctcgactttatca 504  Q
     || | ||||||||||         | ||||||||||||||||| |||| || |||||||   | ||||| | | ||||||||| ||||| ||||| |||    
T  4346682 gtctattttttcgtcaattggttcatcatatatgagataaactgctgtcttcgtcacaatgacattgttcaccataacaacaactatctccactttgtca 4346583  T
Q  505 ccaggttccatatttgataccactctctgc 534  Q
    |||||||||||||| |||| || |||||||    
T  4346582 ccaggttccatattcgatatcattctctgc 4346553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 320 - 377
Target Start/End: Original strand, 4132515 - 4132572
Alignment:
Q  320 ctgcaggctctacttgaagagagatcctcttggcagcacattcatttttatcaccact 377  Q
    |||| |||||||||||||||| || ||||||||||||||||||||||| |||||||||    
T  4132515 ctgcgggctctacttgaagagtgaacctcttggcagcacattcattttcatcaccact 4132572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 427 - 534
Target Start/End: Complemental strand, 4362849 - 4362742
Alignment:
Q  427 tcatgatatatgagataaactgttgtcctcatcacaatataactgttcccaaaaacaacaacaatctcgactttatcaccaggttccatatttgatacca 526  Q
    |||| ||||||||||||||||| |||| || |||||||   | ||||| | |  |||| ||| ||||| ||||| |||||||||||||||||||||| ||    
T  4362849 tcatcatatatgagataaactgctgtcttcgtcacaatgacattgttcaccattacaataactatctccactttgtcaccaggttccatatttgatatca 4362750  T
Q  527 ctctctgc 534  Q
    ||||||||    
T  4362749 ctctctgc 4362742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 4e-21; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 427 - 543
Target Start/End: Original strand, 5065447 - 5065563
Alignment:
Q  427 tcatgatatatgagataaactgttgtcctcatcacaatataactgttcccaaaaacaacaacaatctcgactttatcaccaggttccatatttgatacca 526  Q
    |||| ||||||||||||||||||||||||| ||||||   ||| |||| |||||||||||||||  || |||||||  |||||||| ||| ||||||| |    
T  5065447 tcatcatatatgagataaactgttgtcctcttcacaacgaaaccgttctcaaaaacaacaacaaaatccactttatttccaggttcaatacttgatacta 5065546  T
Q  527 ctctctgctcctcctca 543  Q
    |||||||| ||||||||    
T  5065547 ctctctgcccctcctca 5065563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 432 - 542
Target Start/End: Complemental strand, 5253825 - 5253715
Alignment:
Q  432 atatatgagataaactgttgtcctcatcacaatataactgttcccaaaaacaacaacaatctcgactttatcaccaggttccatatttgataccactctc 531  Q
    |||||||||||||||||| |||||| |||||||  |||||||| ||||||||||||||| ||| |||||||  |||||||| ||| || |||  |||||     
T  5253825 atatatgagataaactgtcgtcctcttcacaatgaaactgttctcaaaaacaacaacaaactccactttatttccaggttcaatacttaataatactctt 5253726  T
Q  532 tgctcctcctc 542  Q
    ||| |||||||    
T  5253725 tgcccctcctc 5253715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 427 - 543
Target Start/End: Original strand, 5126627 - 5126743
Alignment:
Q  427 tcatgatatatgagataaactgttgtcctcatcacaatataactgttcccaaaaacaacaacaatctcgactttatcaccaggttccatatttgatacca 526  Q
    |||| ||||||||||||||| | |||| || |||||||  ||| ||||  |||||||||||||||||| ||||| | ||||| ||| ||| ||||||| |    
T  5126627 tcatcatatatgagataaacagctgtcttcttcacaatgaaaccgttcttaaaaacaacaacaatctcaactttgttaccagcttctatacttgatacta 5126726  T
Q  527 ctctctgctcctcctca 543  Q
    |||||| | ||||||||    
T  5126727 ctctctccccctcctca 5126743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 427 - 533
Target Start/End: Complemental strand, 5178036 - 5177930
Alignment:
Q  427 tcatgatatatgagataaactgttgtcctcatcacaatataactgttcccaaaaacaacaacaatctcgactttatcaccaggttccatatttgatacca 526  Q
    |||| ||||| |||||||||||||||  || |||||||  ||| |||| ||||||||||||||| ||| ||||| | || |||||| ||| ||||||| |    
T  5178036 tcatcatatacgagataaactgttgttttcttcacaatgaaaccgttctcaaaaacaacaacaacctccactttgttacaaggttctatacttgatacta 5177937  T
Q  527 ctctctg 533  Q
    |||||||    
T  5177936 ctctctg 5177930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 427 - 533
Target Start/End: Complemental strand, 5279861 - 5279755
Alignment:
Q  427 tcatgatatatgagataaactgttgtcctcatcacaatataactgttcccaaaaacaacaacaatctcgactttatcaccaggttccatatttgatacca 526  Q
    |||| ||||| |||||||||||||||  || |||||||  ||| |||| ||||||||||||||| ||| ||||| | || |||||| ||| ||||||| |    
T  5279861 tcatcatatacgagataaactgttgttttcttcacaatgaaaccgttctcaaaaacaacaacaacctccactttgttacaaggttctatacttgatacta 5279762  T
Q  527 ctctctg 533  Q
    |||||||    
T  5279761 ctctctg 5279755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 427 - 543
Target Start/End: Complemental strand, 5346326 - 5346210
Alignment:
Q  427 tcatgatatatgagataaactgttgtcctcatcacaatataactgttcccaaaaacaacaacaatctcgactttatcaccaggttccatatttgatacca 526  Q
    |||| |||||||||||||| || |||| || |||||||  |||  ||| ||| |||||| |||| ||| ||||| | ||||||||| ||| ||||||| |    
T  5346326 tcatcatatatgagataaattgctgtcttcttcacaatgaaaccattctcaataacaacgacaacctccactttgttaccaggttctatacttgatacaa 5346227  T
Q  527 ctctctgctcctcctca 543  Q
    |||||||  ||||||||    
T  5346226 ctctctggccctcctca 5346210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 427 - 533
Target Start/End: Original strand, 5688901 - 5689007
Alignment:
Q  427 tcatgatatatgagataaactgttgtcctcatcacaatataactgttcccaaaaacaacaacaatctcgactttatcaccaggttccatatttgatacca 526  Q
    |||| ||||| |||||||||||||||  || |||||||  ||| |||| ||||||||  ||||| ||| ||||| | || |||||| ||| ||||||| |    
T  5688901 tcatcatatacgagataaactgttgttttcttcacaatgaaaccgttctcaaaaacagaaacaacctccactttgttacaaggttctatacttgatacta 5689000  T
Q  527 ctctctg 533  Q
    |||||||    
T  5689001 ctctctg 5689007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 427 - 543
Target Start/End: Original strand, 36212919 - 36213035
Alignment:
Q  427 tcatgatatatgagataaactgttgtcctcatcacaatataactgttcccaaaaacaacaacaatctcgactttatcaccaggttccatatttgatacca 526  Q
    |||| ||| ||||||||||  | |||| || |||||||  || ||||| ||||||||||||||| ||| | ||||||||||||||| ||| ||||||| |    
T  36212919 tcatcataaatgagataaatcgctgtcttcttcacaatgaaattgttctcaaaaacaacaacaacctccattttatcaccaggttctatacttgatacta 36213018  T
Q  527 ctctctgctcctcctca 543  Q
     ||||||| ||||||||    
T  36213019 atctctgcccctcctca 36213035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 439 - 543
Target Start/End: Original strand, 47985403 - 47985507
Alignment:
Q  439 agataaactgttgtcctcatcacaatataactgttcccaaaaacaacaacaatctcgactttatcaccaggttccatatttgataccactctctgctcct 538  Q
    |||||||||| | ||||| |||||||  |||  ||| ||||||||||||| | ||| ||||| | ||| ||||| ||| ||||||| ||||||| | |||    
T  47985403 agataaactgctatcctcttcacaatgaaaccattctcaaaaacaacaaccacctccactttgttaccgggttctatacttgatactactctctccccct 47985502  T
Q  539 cctca 543  Q
    |||||    
T  47985503 cctca 47985507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 439 - 543
Target Start/End: Original strand, 48003977 - 48004081
Alignment:
Q  439 agataaactgttgtcctcatcacaatataactgttcccaaaaacaacaacaatctcgactttatcaccaggttccatatttgataccactctctgctcct 538  Q
    |||||||||| | ||||| |||||||  |||  ||| ||||||||||||| | ||| ||||| | ||| ||||| ||| ||||||| ||||||| | |||    
T  48003977 agataaactgctatcctcttcacaatgaaaccattctcaaaaacaacaaccacctccactttgttaccgggttctatacttgatactactctctccccct 48004076  T
Q  539 cctca 543  Q
    |||||    
T  48004077 cctca 48004081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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