View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2188_low_3 (Length: 458)
Name: NF2188_low_3
Description: NF2188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2188_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 418; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 7 - 440
Target Start/End: Original strand, 34408533 - 34408966
Alignment:
| Q |
7 |
aagtccgaagcatacgtttctcccgtataattgttactaactgtaataactaactaaatgtagttgaccgagtgatgtttagcgaaaaagtagatcgtgt |
106 |
Q |
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| T |
34408533 |
aagtccgaagcataagtttctcccgtataattgttactaactgtaataactaactaaatgtagttgaccgagtgatgtttagcgaaaaagtagatcgtgt |
34408632 |
T |
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| Q |
107 |
tatcacttgtggattaataaagttctatttatagtaatgctcaacctccatataatctccacactttgtggtaacttatgacagtacttatggataaatt |
206 |
Q |
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| T |
34408633 |
tatcacttgtggattaataaagttctatttatagtaatgctcaacctccatataatctccacactttgtggtaacttatgacagtacttatggataaatt |
34408732 |
T |
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| Q |
207 |
gtaattacaaaagaaaagacacaccagaacacaagctagctactagacctttgaataagttgtaattggttacatcacattgttgcattgcaaagatata |
306 |
Q |
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| T |
34408733 |
gtaattacaaaagaaaagacacaccagaacacaagctagctactagacctttgaataagttgtaattggttacatcacattgttgcattgcaaagatata |
34408832 |
T |
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| Q |
307 |
ttgattggaaacatgtcgtcgtcagatgatattgcagcaaggcagaaggccatcgatgattggcttcccgtcactgcctcgaggaaagccaaatggtggt |
406 |
Q |
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| T |
34408833 |
ttgatcggaaacatgtcatcgtcagatgatgttgcagcaaggcagaaggccatcgatgattggcttcccgtcactgcctcgaggaaagccaaatggtggt |
34408932 |
T |
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| Q |
407 |
actctgcttttcacaatatcacggccatggttgg |
440 |
Q |
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| T |
34408933 |
actctgcttttcacaatatcacggccatggttgg |
34408966 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 352 - 442
Target Start/End: Complemental strand, 38828053 - 38827963
Alignment:
| Q |
352 |
aaggccatcgatgattggcttcccgtcactgcctcgaggaaagccaaatggtggtactctgcttttcacaatatcacggccatggttggtg |
442 |
Q |
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| T |
38828053 |
aaggccattgatgattggcttcctgtaactgcttctagaaatgccaaatggtggtattcggcgttccacaatctaacagccatggttggtg |
38827963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 388 - 440
Target Start/End: Complemental strand, 7980097 - 7980045
Alignment:
| Q |
388 |
aggaaagccaaatggtggtactctgcttttcacaatatcacggccatggttgg |
440 |
Q |
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| T |
7980097 |
aggaatgcaaaatggtggtactcagcttttcacaatgtcactgccatggttgg |
7980045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 352 - 440
Target Start/End: Original strand, 43851749 - 43851837
Alignment:
| Q |
352 |
aaggccatcgatgattggcttcccgtcactgcctcgaggaaagccaaatggtggtactctgcttttcacaatatcacggccatggttgg |
440 |
Q |
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| T |
43851749 |
aaggcaatagatgattggcttcccataacttcttcaaggaatgcaaaatggtggtacgcagcttttcacaatgttactgccatggttgg |
43851837 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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