View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2188_low_4 (Length: 413)
Name: NF2188_low_4
Description: NF2188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2188_low_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 48 - 337
Target Start/End: Original strand, 42061004 - 42061294
Alignment:
| Q |
48 |
ttctgatctaataggttaccgatcgaactaccatcaacattaactcaatatgtagagcgatgaataaaaatttacgacaaggcttgtctacatatcatat |
147 |
Q |
| |
|
|||||||||| ||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |
|
|
| T |
42061004 |
ttctgatctactaggttacctatcgaactaccatcaacattaattcaatatgtagagcgatgaataaaaatttatgacgaggcttgtctacatatcatat |
42061103 |
T |
|
| Q |
148 |
atttcatattttcttgtnnnnnnnnn--tatgtatttcatattttctgcaaatacaaacagaaaaactcatcggatgaaaagtaaatacatttttaattt |
245 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
42061104 |
atttcatattttcttgtaaaaaaaaaaatatgtatttcatattttttgcaaatacaaacagaacaactcatcggatgaaaagtaaatacatttttaattt |
42061203 |
T |
|
| Q |
246 |
taatattctttgtatattgttgcactatgtgaacaaaatccatcatttatacctctcacttgagaccgataatagctcagatcaaccttatc |
337 |
Q |
| |
|
||||||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
42061204 |
taatattctttgtat-ttgttgcactgtgtgaaccaaatccatcatttatacctctcacttgagaccgagaatagctcagatcaaccttatc |
42061294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 11 - 42
Target Start/End: Original strand, 42060898 - 42060929
Alignment:
| Q |
11 |
cagagagtgaaggagaataagacaatccagga |
42 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
42060898 |
cagagagtgaaggagaataagacaatccagga |
42060929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University