View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2188_low_5 (Length: 408)
Name: NF2188_low_5
Description: NF2188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2188_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 243; Significance: 1e-134; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 8 - 391
Target Start/End: Complemental strand, 10418299 - 10417903
Alignment:
| Q |
8 |
cgaagaatatagacatttcagcacagaacgcagtcacaagcgactaggtgtacagaacggggcatccaaaggcgcccaagcgcatgaaatgaggcaccag |
107 |
Q |
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| T |
10418299 |
cgaagaaaatagacatttcagcacagaacgcagtcacaagcgactaggc-tacagaacggggcgtccaaaggcgcccaagcgcatgaaaggaggcaccag |
10418201 |
T |
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| Q |
108 |
gcgcctaacataccaggcacatgcgcttggcaaatgggtataggcgctaggcgcatgtgacttgtaggtcaagtcaccgtttt-----------gtgaag |
196 |
Q |
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| T |
10418200 |
gcgcctaacataccaggcacatgcgcctggcgaatgggtataggcgcttagcgcctgtgacttgtaggtcaagtcaccgttttgtgacttttttgtgaag |
10418101 |
T |
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| Q |
197 |
atctcaacccaactaaccatcttcctcagtccaattggatcaattatattatatggtttgttcctataatatgcaatgtcttggatatattaaatcttac |
296 |
Q |
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|||| |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
10418100 |
atctgaacccaaccaaccatcttcctcggtccaattggatcaattatattatatggtttgttcctataatatgcaatgtcttggatatattaaattttac |
10418001 |
T |
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| Q |
297 |
---nnnnnnnnnnnnngagggattaaattttacttgatgtgatctaatggattcacaaaaacaaagggtggattcaaaataatctttggtgttaaatg |
391 |
Q |
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| T |
10418000 |
ttgaattttttttttggagggattaaattttacttgatgtgatctaatggattcacaaaaacaaagggtggattcaaaataatctttggcgttaaatg |
10417903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 161
Target Start/End: Original strand, 22470850 - 22470923
Alignment:
| Q |
88 |
cgcatgaaatgaggcaccaggcgcctaacataccaggcacatgcgcttggcaaatgggtataggcgctaggcgc |
161 |
Q |
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| T |
22470850 |
cgcatggaatggggcgccaggcgcctgacttagcaggtacatgcgcatggcgcatgggtataggcgcttggcgc |
22470923 |
T |
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