View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2188_low_8 (Length: 337)
Name: NF2188_low_8
Description: NF2188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2188_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 320
Target Start/End: Complemental strand, 36082321 - 36081990
Alignment:
| Q |
1 |
tgccaaatgtcattgacac--caaaaataatttgtccacccgacaattaagatatatgggacaagatcaattgacactatagtttcaaacttaaaatatg |
98 |
Q |
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||||||||||||||||||| ||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| || || |||||||||||||||| |
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| T |
36082321 |
tgccaaatgtcattgacacatcaaaaataacttgtccatccgacaattaagatatatgggacaagatcaattgacaccatggtgtcaaacttaaaatatg |
36082222 |
T |
|
| Q |
99 |
acatacaataattttttactatataaatgtattacaaaatcgactattgaaagtggacatgtgaacagaaaaataatctcttaataatttgagagttgag |
198 |
Q |
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|||||||||||||||||| | ||||| ||||||||||||||| ||||| |||||| ||||||||||| |||||| ||||||||||||||||||||||||| |
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| T |
36082221 |
acatacaataattttttagtgtataactgtattacaaaatcgcctattaaaagtgtacatgtgaacacaaaaatgatctcttaataatttgagagttgag |
36082122 |
T |
|
| Q |
199 |
aaaagttaacattcagagccatatgggattaatgggccaaagatgcagcccaagaagagtgaacccaatgaagc----------cacgtgaatatttctt |
288 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| ||||||| |
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| T |
36082121 |
aaaagttaacattaagagccatatgggattaatgggccaaagatgcagcccaagaagagtggacccaatgaagccatgcaataacacgtgaagatttctt |
36082022 |
T |
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| Q |
289 |
tttaggcccctcaatgaacgagagacaaatgt |
320 |
Q |
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|||||||||||||||||||||||| ||||||| |
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| T |
36082021 |
tttaggcccctcaatgaacgagaggcaaatgt |
36081990 |
T |
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