View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2189_low_1 (Length: 500)
Name: NF2189_low_1
Description: NF2189
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2189_low_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 412; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 7 - 485
Target Start/End: Original strand, 32936574 - 32937046
Alignment:
| Q |
7 |
ggacatcatcattttatgagttaacttttgagagttagattcaagctcatttgatacaatattagagttggttaaggttaaagatgacaatgtgagaatt |
106 |
Q |
| |
|
||||| |||||||| |||||||||||| |||||||||||||||||||||||||||| ||||| |||||||||||| ||| ||||||||||||||| |
|
|
| T |
32936574 |
ggacaccatcatttaatgagttaacttctgagagttagattcaagctcatttgatataatatcagagttggttaa------agacgacaatgtgagaatt |
32936667 |
T |
|
| Q |
107 |
gagtctaggacccacgctaagcataagggtggacgaagttgtattaaggtcgcattgtcaaggttctcttttatatacgtatataggttgcagtacccta |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32936668 |
gagtctaggacccacgctaagcataagggtggacgaagttgtattaaggtcgcattgtcaaggttctcttttatatacgtatataggttgcagtacccta |
32936767 |
T |
|
| Q |
207 |
atcttacaagctaatagctagcttttgagattgataatcaaagtccatctaacaatatctaatgcaaaattacaatacattaccattttctattatcata |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32936768 |
atcttacaagctaatagctagcttttgagattgatattcaaagtccatctaataatatctaatgcaaaattacaatacattaccattttctattatcata |
32936867 |
T |
|
| Q |
307 |
ttctttaatagaaactggaatatgcaatttttcaacactctttttgagctaatgaaaaaggaaactaaaatggatttatcgatgaatcatttctctgttt |
406 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
32936868 |
ttctttaatagaaactggaatatgcaatttttcaacactctttttcagctaatgaaaaaggaaactaaaacggatttatcgatgaatcatttctctgttt |
32936967 |
T |
|
| Q |
407 |
tgttttgcaggaattttaccatgtgcaatgttaatacccgggttgtacttcattccagaatcacctagatggttggtat |
485 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32936968 |
tgttttgcaggaattttaccatgtgcaatattaatacccgggttgtacttcattccagaatcacctagatggttggtat |
32937046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 414 - 485
Target Start/End: Original strand, 32929253 - 32929324
Alignment:
| Q |
414 |
caggaattttaccatgtgcaatgttaatacccgggttgtacttcattccagaatcacctagatggttggtat |
485 |
Q |
| |
|
|||||||||| || ||| || | ||||||||||| |||| ||||| |||||||| |||||||||||||||| |
|
|
| T |
32929253 |
caggaattttgccttgtacagtattaatacccggattgtttttcataccagaatctcctagatggttggtat |
32929324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 414 - 485
Target Start/End: Complemental strand, 7753908 - 7753837
Alignment:
| Q |
414 |
caggaattttaccatgtgcaatgttaatacccgggttgtacttcattccagaatcacctagatggttggtat |
485 |
Q |
| |
|
||||||||||||||||| |||| |||||||| || || | ||||| ||||||||||| ||||||||||||| |
|
|
| T |
7753908 |
caggaattttaccatgtacaatattaatacctggattatttttcataccagaatcaccaagatggttggtat |
7753837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University