View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2189_low_2 (Length: 368)
Name: NF2189_low_2
Description: NF2189
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2189_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 211; Significance: 1e-115; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 24125502 - 24125247
Alignment:
| Q |
1 |
tgtggaatcaactttccacttgtttttctttctgaaaatggttccgttgaagnnnnnnntcatacatcatgtacctattacgagtggaaattggccttga |
100 |
Q |
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| T |
24125502 |
tgtggaatcaactttccacttgtttttctttctgaaaatggttccgttgaagaaaaaaatcatacatcatgtacctattatgagtggaaattggccttga |
24125403 |
T |
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| Q |
101 |
ttttatattggagctaatagagtagggcgatggggggtgagtctaggtcagactatctctggaaacaaggacctagtttttgtcaaccccacctgagagt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |||| |
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| T |
24125402 |
ttttatattggagctaatagagtagggcgatggggggtgagtctaggtcagactatccctggaaacaaggacctagtttttgtcaaccccacccgggagt |
24125303 |
T |
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| Q |
201 |
gttcacttttcttattttgaaagttttcaaatgttcttttcagttaggttgcttat |
256 |
Q |
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| T |
24125302 |
gttcacttttcttattttgaaagtttccaaatgttcttttcagttagattgcttat |
24125247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 281 - 327
Target Start/End: Complemental strand, 24124546 - 24124500
Alignment:
| Q |
281 |
tttggcgactcttgtatcatatctcttctttgttttatatatataat |
327 |
Q |
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| T |
24124546 |
tttggcgactcttgtatcgtatctcttctttgttttatatatataat |
24124500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 146 - 256
Target Start/End: Original strand, 45163326 - 45163435
Alignment:
| Q |
146 |
ggtcagactatctctggaaacaaggacctagtttttgtcaaccccacctgagagtgttcacttttcttattttgaaagttttcaaatgttcttttcagtt |
245 |
Q |
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| T |
45163326 |
ggtcaaactatccctgaaagcaaggacctggttcttgccaaccccacctaggagtgttcactttacttattttgaaagttttcaaat-ttcttttcaatt |
45163424 |
T |
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| Q |
246 |
aggttgcttat |
256 |
Q |
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| | ||||||| |
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| T |
45163425 |
acgctgcttat |
45163435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 45163247 - 45163287
Alignment:
| Q |
5 |
gaatcaactttccacttgtttttctttctgaaaatggttcc |
45 |
Q |
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| T |
45163247 |
gaatcaactttccacttgttcttctttctgaaaatggttcc |
45163287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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