View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2189_low_4 (Length: 330)
Name: NF2189_low_4
Description: NF2189
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2189_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 18 - 322
Target Start/End: Complemental strand, 39088868 - 39088564
Alignment:
| Q |
18 |
acctatatctagaagtgtataccataaacataaagggtacctttgcattaaagtgaaagcgatccacaccattccaattatcgagatcataagcggtaaa |
117 |
Q |
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| T |
39088868 |
acctatatctagaattgtataccataaacataaagggtacctttgcattaaagtgaaagcgatccacaccattccaattatcgagatcataagcggtaaa |
39088769 |
T |
|
| Q |
118 |
gtgtttacatgaagcagccacctttaaccggctattgtcggttccctgtagtcctctcacataactggcagcgtatttacctgctagaattggatcctca |
217 |
Q |
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|||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39088768 |
gtgtttacatgaagcagccacctttaaccggctactgtctgttccctgtagtcctctcacataactggcagcgtatttacctgctagaattggatcctca |
39088669 |
T |
|
| Q |
218 |
ccgggagtctcctgtccacgaccccatcgtgggtcccgaaaaatgttcacatttggactccaatatgtcaaccctgccgttcctccgttgtacattgcct |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39088668 |
ccgggagtctcctgtccacgaccccatcgtgggtcccgaaaaatgttcacatttggactccaatatgtcaaccctgccgttcctccgttgtacattgccc |
39088569 |
T |
|
| Q |
318 |
ttgct |
322 |
Q |
| |
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||||| |
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| T |
39088568 |
ttgct |
39088564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 94; Significance: 7e-46; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 61 - 322
Target Start/End: Original strand, 44718100 - 44718361
Alignment:
| Q |
61 |
tgcattaaagtgaaagcgatccacaccattccaattatcgagatcataagcggtaaagtgtttacatgaagcagccacctttaaccggctattgtcggtt |
160 |
Q |
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||||||||||||||||||||||||||||||||||||||| | ||||||||| || |||||||| || ||||||| ||||| ||| | || ||| ||| |
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| T |
44718100 |
tgcattaaagtgaaagcgatccacaccattccaattatcaacatcataagctgtgaagtgtttgcaacaagcagctaccttcaacttgttaccgtctgtt |
44718199 |
T |
|
| Q |
161 |
ccctgtagtcctctcacataactggcagcgtatttacctgctagaattggatcctcaccgggagtctcctgtccacgaccccatcgtgggtcccgaaaaa |
260 |
Q |
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|||||||| || | |||||||| || || ||| |||| ||||| | || || ||||||||||| ||||||||||||||||| | ||||| | |||| |
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| T |
44718200 |
ccctgtagccccttaacataactagcggcatatctaccggctagtacagggtcttcaccgggagtttcctgtccacgaccccacctagggtctctgaaaa |
44718299 |
T |
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| Q |
261 |
tgttcacatttggactccaatatgtcaaccctgccgttcctccgttgtacattgcctttgct |
322 |
Q |
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|||||||||||||||||||||| || |||||||| | |||||| |||||||||||| ||||| |
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| T |
44718300 |
tgttcacatttggactccaataagttaaccctgctgctcctccattgtacattgcccttgct |
44718361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 176 - 315
Target Start/End: Complemental strand, 13300547 - 13300408
Alignment:
| Q |
176 |
acataactggcagcgtatttacctgctagaattggatcctcaccgggagtctcctgtccacgaccccatcgtgggtcccgaaaaatgttcacatttggac |
275 |
Q |
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||||||||||| || ||||| || || | | | ||||| |||||||| ||||| || ||||| ||||| ||||| || || ||||| |||||||| |||| |
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| T |
13300547 |
acataactggcggcatattttccggccacagtgggatcttcaccgggtgtctcttggccacggccccaccgtggatcacggaaaatattcacattaggac |
13300448 |
T |
|
| Q |
276 |
tccaatatgtcaaccctgccgttcctccgttgtacattgc |
315 |
Q |
| |
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||||| | ||||||||||| | ||| || ||||||||||| |
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| T |
13300447 |
tccaaaaagtcaaccctgcagctccaccattgtacattgc |
13300408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 62 - 126
Target Start/End: Complemental strand, 25957435 - 25957371
Alignment:
| Q |
62 |
gcattaaagtgaaagcgatccacaccattccaattatcgagatcataagcggtaaagtgtttaca |
126 |
Q |
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|||| ||||| ||| ||||||||||| ||||||||||| | |||||| || |||||||||||||| |
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| T |
25957435 |
gcatcaaagtcaaaacgatccacacctttccaattatccaaatcataggcagtaaagtgtttaca |
25957371 |
T |
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