View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2189_low_5 (Length: 291)

Name: NF2189_low_5
Description: NF2189
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2189_low_5
NF2189_low_5
[»] chr6 (3 HSPs)
chr6 (11-291)||(34216645-34216925)
chr6 (154-188)||(14385448-14385482)
chr6 (241-291)||(31437549-31437599)
[»] chr3 (2 HSPs)
chr3 (60-289)||(21093356-21093584)
chr3 (61-112)||(14679836-14679887)
[»] chr7 (2 HSPs)
chr7 (194-291)||(11482809-11482906)
chr7 (60-141)||(11482902-11482983)
[»] chr4 (2 HSPs)
chr4 (86-189)||(19551447-19551550)
chr4 (153-188)||(3009039-3009074)
[»] scaffold0061 (1 HSPs)
scaffold0061 (60-112)||(38085-38137)
[»] scaffold0017 (1 HSPs)
scaffold0017 (60-112)||(160642-160694)
[»] chr2 (2 HSPs)
chr2 (60-112)||(20380961-20381013)
chr2 (60-110)||(25976639-25976689)
[»] scaffold0567 (1 HSPs)
scaffold0567 (153-188)||(839-874)
[»] scaffold0490 (1 HSPs)
scaffold0490 (61-112)||(12090-12141)
[»] scaffold0125 (1 HSPs)
scaffold0125 (61-112)||(31435-31486)
[»] chr8 (2 HSPs)
chr8 (154-188)||(17271738-17271772)
chr8 (153-189)||(45270546-45270582)


Alignment Details
Target: chr6 (Bit Score: 265; Significance: 1e-148; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 11 - 291
Target Start/End: Original strand, 34216645 - 34216925
Alignment:
Q  11 acatcatcaagtggtgtagaagagagtgtctgttcttgcaacagagatatatttccttcaatgtttgttcccgccaatattcttgcggtaagtcaaccaa 110  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34216645 acatcattaagtggtgtagaagagagtgtctgttcttgcaacagagacatatttccttcaatgtttgttcccgccaatattcttgcggtaagtcaaccaa 34216744  T
Q  111 acagatccagatagaagcgtgagtctgcttctgtgaatactaattaaaatccttcgtccattgggagagacgaaggagatctggcttcaaatcaatggta 210  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34216745 acggatccagatagaagcgtgagtctgcttctgtgaatactaattaaaatccttcgtccattgggagagacgaaggagatctggcttcaaatcaatggta 34216844  T
Q  211 ccagccgaccaaattttttgtaagtcctctgccgactcaaaatgaaaatcgtaatagcccctgccaagcggtaccattttc 291  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  34216845 ccagccgaccaaattttttgtaagtcctctgccgactcaaaatgaaaatcgtaatagcccatgccaagcggtaccattttc 34216925  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 154 - 188
Target Start/End: Original strand, 14385448 - 14385482
Alignment:
Q  154 ttaaaatccttcgtccattgggagagacgaaggag 188  Q
    |||||||||||||||||||||||||| ||||||||    
T  14385448 ttaaaatccttcgtccattgggagaggcgaaggag 14385482  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 291
Target Start/End: Original strand, 31437549 - 31437599
Alignment:
Q  241 gccgactcaaaatgaaaatcgtaatagcccctgccaagcggtaccattttc 291  Q
    |||||||||||||||||||| ||||| ||||| |||||||  |||||||||    
T  31437549 gccgactcaaaatgaaaatcataatatccccttccaagcgacaccattttc 31437599  T

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Target: chr3 (Bit Score: 62; Significance: 8e-27; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 60 - 289
Target Start/End: Complemental strand, 21093584 - 21093356
Alignment:
Q  60 tatttccttcaatgtttgttcccgccaatattcttgcggtaagtcaaccaaacagatccagatagaagcgtgagtctgcttctgtgaatactaattaaaa 159  Q
    |||||||||||| ||  ||||| || |||||||||| ||||| || ||||| | |||||| || ||||| |||||||| ||||||||||| | |  |||     
T  21093584 tatttccttcaaagtacgttcctgctaatattcttgtggtaattcgaccaagcggatccaaatggaagcatgagtctggttctgtgaataatgagaaaag 21093485  T
Q  160 tccttcgtccattgggagagacgaaggagatctggcttcaaatcaatggtaccagccgaccaaattttttgtaagtcctctgccgactcaaaatgaaaat 259  Q
    || ||   ||||||||||| |||||||||| ||||| | ||||  || |||| |||||||||||| ||  |||||||||| |||||||||||||| || |    
T  21093484 tcttttagccattgggagaaacgaaggagacctggccttaaattgatagtactagccgaccaaatattccgtaagtcctcggccgactcaaaatg-aagt 21093386  T
Q  260 cgtaatagcccctgccaagcggtaccattt 289  Q
    | ||||| ||||| |||||||| |||||||    
T  21093385 cataataaccccttccaagcggcaccattt 21093356  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 61 - 112
Target Start/End: Original strand, 14679836 - 14679887
Alignment:
Q  61 atttccttcaatgtttgttcccgccaatattcttgcggtaagtcaaccaaac 112  Q
    ||||||||||||||  ||||||||||||| ||||||||||| ||||||||||    
T  14679836 atttccttcaatgtacgttcccgccaatactcttgcggtaactcaaccaaac 14679887  T

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Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 194 - 291
Target Start/End: Complemental strand, 11482906 - 11482809
Alignment:
Q  194 gcttcaaatcaatggtaccagccgaccaaattttttgtaagtcctctgccgactcaaaatgaaaatcgtaatagcccctgccaagcggtaccattttc 291  Q
    |||||||||||| | ||||||  |||||| ||||| |||||||||||||||||| || ||||||||||||||||||||| | |||  |||||||||||    
T  11482906 gcttcaaatcaacgataccagttgaccaattttttcgtaagtcctctgccgactaaatatgaaaatcgtaatagccccttcaaagtagtaccattttc 11482809  T

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Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 60 - 141
Target Start/End: Complemental strand, 11482983 - 11482902
Alignment:
Q  60 tatttccttcaatgtttgttcccgccaatattcttgcggtaagtcaaccaaacagatccagatagaagcgtgagtctgcttc 141  Q
    ||||||||||  ||||||||||| |||||||||||||||||| ||||||| || | | ||||||||||| ||||||||||||    
T  11482983 tatttccttcggtgtttgttcccaccaatattcttgcggtaattcaaccatacgggttcagatagaagcatgagtctgcttc 11482902  T

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Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 86 - 189
Target Start/End: Complemental strand, 19551550 - 19551447
Alignment:
Q  86 aatattcttgcggtaagtcaaccaaacagatccagatagaagcgtgagtctgcttctgtgaatactaattaaaatccttcgtccattgggagagacgaag 185  Q
    |||||||||| || || |||||||| |  ||||| || ||||||||||| ||||||| |||||| | |||||| ||||||||| |||| |||||||||||    
T  19551550 aatattcttggggcaattcaaccaagcgaatccaaatggaagcgtgagtttgcttctatgaataatgattaaagtccttcgtctattgtgagagacgaag 19551451  T
Q  186 gaga 189  Q
    ||||    
T  19551450 gaga 19551447  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 153 - 188
Target Start/End: Original strand, 3009039 - 3009074
Alignment:
Q  153 attaaaatccttcgtccattgggagagacgaaggag 188  Q
    ||||||||||||||||||||||||||| ||||||||    
T  3009039 attaaaatccttcgtccattgggagaggcgaaggag 3009074  T

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Target: scaffold0061 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 112
Target Start/End: Complemental strand, 38137 - 38085
Alignment:
Q  60 tatttccttcaatgtttgttcccgccaatattcttgcggtaagtcaaccaaac 112  Q
    |||||||||||||||| | ||||||||||| ||||||||||| || |||||||    
T  38137 tatttccttcaatgttcgctcccgccaatactcttgcggtaactccaccaaac 38085  T

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Target: scaffold0017 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 112
Target Start/End: Original strand, 160642 - 160694
Alignment:
Q  60 tatttccttcaatgtttgttcccgccaatattcttgcggtaagtcaaccaaac 112  Q
    |||||||||||||||| | ||||||||||| ||||||||||| || |||||||    
T  160642 tatttccttcaatgttcgctcccgccaatactcttgcggtaactccaccaaac 160694  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 112
Target Start/End: Complemental strand, 20381013 - 20380961
Alignment:
Q  60 tatttccttcaatgtttgttcccgccaatattcttgcggtaagtcaaccaaac 112  Q
    |||||||||||||||| | ||||||||||| ||||||||||| || |||||||    
T  20381013 tatttccttcaatgttcgctcccgccaatactcttgcggtaactccaccaaac 20380961  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 110
Target Start/End: Original strand, 25976639 - 25976689
Alignment:
Q  60 tatttccttcaatgtttgttcccgccaatattcttgcggtaagtcaaccaa 110  Q
    |||||||||||| ||| ||||||||||||| ||||||||||| || |||||    
T  25976639 tatttccttcaaggttcgttcccgccaatactcttgcggtaactccaccaa 25976689  T

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Target: scaffold0567 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0567
Description:

Target: scaffold0567; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 153 - 188
Target Start/End: Complemental strand, 874 - 839
Alignment:
Q  153 attaaaatccttcgtccattgggagagacgaaggag 188  Q
    ||||||||||||||||||||||||||| ||||||||    
T  874 attaaaatccttcgtccattgggagaggcgaaggag 839  T

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Target: scaffold0490 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0490
Description:

Target: scaffold0490; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 61 - 112
Target Start/End: Complemental strand, 12141 - 12090
Alignment:
Q  61 atttccttcaatgtttgttcccgccaatattcttgcggtaagtcaaccaaac 112  Q
    ||||||||||||||  | ||||||||||| ||||||||||| ||||||||||    
T  12141 atttccttcaatgtacgctcccgccaatactcttgcggtaactcaaccaaac 12090  T

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Target: scaffold0125 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0125
Description:

Target: scaffold0125; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 61 - 112
Target Start/End: Original strand, 31435 - 31486
Alignment:
Q  61 atttccttcaatgtttgttcccgccaatattcttgcggtaagtcaaccaaac 112  Q
    ||||||||||||||   |||||||||||| ||||||||||| ||||||||||    
T  31435 atttccttcaatgtacattcccgccaatactcttgcggtaactcaaccaaac 31486  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 154 - 188
Target Start/End: Complemental strand, 17271772 - 17271738
Alignment:
Q  154 ttaaaatccttcgtccattgggagagacgaaggag 188  Q
    |||||||||||||||||||||||||| ||||||||    
T  17271772 ttaaaatccttcgtccattgggagaggcgaaggag 17271738  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 189
Target Start/End: Original strand, 45270546 - 45270582
Alignment:
Q  153 attaaaatccttcgtccattgggagagacgaaggaga 189  Q
    ||||||||||||||||||||| || ||||||||||||    
T  45270546 attaaaatccttcgtccattgagaaagacgaaggaga 45270582  T

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